Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme16431g00001 GATGTTAAGACTGCAGACATAATCTCAGAAGCTGCTCTTGAATCTGCAGTTCTGCAATTCGTCCCCTGCATCCGTTCTGGTAGTTTTGCTGACATTGGGCCGCGTAGATACATGGAAGATGAACATATAAGAATAGATGACTTGTCTTCTAATCTGGGATCACTATATAATTTTCCTAAACCAAGTGCCTTTTATGGGGTGTTTGATGGTCATGGAGGACCTGAAGCTGCAGCTTATATAAGAAAAAATGTTATAAAATTCTTCTTTGAAGACGTCAATTTCCCTCAAACATCTGAAGTTGATAACATATTTTTACAAGAGGTGGAGAATTCCCTCAGAAAGGCTTTTCTTTTGGCAGATTCAGCTTTGGCTGATGATTGCAGTGTGAACACTTCATCAGGGACCACAGCTCTTACTGCTATGATATTTGGAAGGCTTCTAATGGTGGCCAATGCTGGTGACTGTCGAGCAGTTCTCAGTCGTAAAGGAGAGGCCATTGACATGTCTCAAGATCACCGACCTATTTATCCATCAGAACGGAGGCGAGTTGAAGAATTGGGTGGTTACGTAGAGGATGGTTATCTTAATGG 590 0.4186 DVKTADIISEAALESAVLQFVPCIRSGSFADIGPRRYMEDEHIRIDDLSSNLGSLYNFPKPSAFYGVFDGHGGPEAAAYIRKNVIKFFFEDVNFPQTSEVDNIFLQEVENSLRKAFLLADSALADDCSVNTSSGTTALTAMIFGRLLMVANAGDCRAVLSRKGEAIDMSQDHRPIYPSERRRVEELGGYVEDGYLNG 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme16431g00001 197 Gene3D - 14 197 IPR036457 -
Trme16431g00001 197 SMART PP2C_4 15 197 IPR001932 -
Trme16431g00001 197 SUPERFAMILY PP2C-like 19 197 IPR036457 -
Trme16431g00001 197 ProSitePatterns PPM-type phosphatase domain signature. 64 72 IPR000222 GO:0043169
Trme16431g00001 197 Pfam Protein phosphatase 2C 35 197 IPR001932 -
Trme16431g00001 197 ProSiteProfiles PPM-type phosphatase domain profile. 25 197 IPR001932 -
Trme16431g00001 197 PANTHER PROTEIN PHOSPHATASE 2C 28 197 IPR015655 GO:0004722|GO:0006470
Trme16431g00001 197 CDD PP2Cc 24 197 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme16431g00001 Trme-Chr16431 561 1461 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme16431g00001 38 196 PP2C-type Phosphatase Gene Family AT3G62260 74.375 1.45e-84 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Trme16431g00001 PP2C 3.1e-32 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme16431g00001 K14803 - gmx:100819791 365.155