Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme16427g00001 ATGGCGGGACAACTAGGAGTGCTTAATGCACTCGATGTGGCCAAGACACAAATGTACCATTTCACAGCAATTGTGATTGCTGGAATGGGTTTTTTCACTGATGCTTATGATCTCTTCTGCATTTCCCTAGTCACAAAATTGTTAGGAAGAATCTATTACACAGATTACACCAAACCAAAGCCAGGTGTTCTTCCTCCAAGTGTACAAGCCGCGGTAACTGGTGTCGCGCTATGCGGCACTTTAGCCGGCCAACTGTTCTTCGGTTGGCTTGGTGACAAATTAGGAAGAAAAAAAGTTTATGGTATAACCCTTATGCTTATGGTAGGTTGTTCACTCGCCTCGGGTCTATCGTTTAGTAATAGTCCAAAGGGTGTTATGGCAACACTTTGTTTCTTTAGGTTTTGGCTTGGTTTTGGTATTGGTGGTGATTACCCTCTTTCAGCCACAATTATGTCTGAATACGCCAACAAAAAGACGCGAGGCGCTTTCATTGCTGCTGTGTTTGCTATGCAAGGATTTGGAATCATGGCTGGTGGAATAGTTGCATTGATTGTAGCTACTGCTTTTGATCACAAATATAAAGTTCCTAGTTACGAAGAAAACGCACACGCGTCACTTGTGTTACCAGCATTTGATTACGTTTGGCGTATTATTCTAATGTTTGGTGCAGTTCCAGCAGCACTTACCTATTACTGGCGTATGAAGATGCCGGAGACGGCTCGTTACACAGCACTTGTTGCTAAGAATGCTAAACAAGCAGCTWCTGATATGTCTAAGGTGTTACAAGTTGAMCTTGAAGTTCAAGAGGTAGTTGAGGATAAGACTCAAAAGTTTGGTCTTTTTACCAAGCAATTCGCAAAACGTCACGGTATGCACTTGTTGGGAACAACTACTACTTGGTTCTTGTTGGATATTGCTTTCTATAGTCAGAATCTTTTCCAAAAGGACATTTTCACCGCCATTGGATGGATCCCTCCGGCGAAAGAAATGAACGCAATCCACGAACTTTATAGGATTGCAAGAGCACAAACACTTATAGCAATGTGCAGTACTGTGCCAGGTTACTGGTTTACAGTGGCATTCATCGATTACATGGGTCGATTCGCAATCCAATTGATGGGTTTCTTCTTCATGACCGTCTTCATGTTCGCTCTCGCTATACCTTACGATCACTGGACTAAAAAAGAAAACAGAATCGGATTTGTTGTGATGTACTCATTAACTTTCTTTTTCGCCAATTTTGGTCCAAATGCTACCACATTTGTTGTTCCAGCCGAAATTTTCCCTGCAAGGCTGAGATCCACCTGTCATGGAATTTCGGCTGCTGCAGGAAAAGC 1337 0.4256 MAGQLGVLNALDVAKTQMYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYTDYTKPKPGVLPPSVQAAVTGVALCGTLAGQLFFGWLGDKLGRKKVYGITLMLMVGCSLASGLSFSNSPKGVMATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGIMAGGIVALIVATAFDHKYKVPSYEENAHASLVLPAFDYVWRIILMFGAVPAALTYYWRMKMPETARYTALVAKNAKQAAXDMSKVLQVXLEVQEVVEDKTQKFGLFTKQFAKRHGMHLLGTTTTWFLLDIAFYSQNLFQKDIFTAIGWIPPAKEMNAIHELYRIARAQTLIAMCSTVPGYWFTVAFIDYMGRFAIQLMGFFFMTVFMFALAIPYDHWTKKENRIGFVVMYSLTFFFANFGPNATTFVVPAEIFPARLRSTCHGISAAAGKA 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme16427g00001 446 Pfam Sugar (and other) transporter 24 444 IPR005828 GO:0016020|GO:0022857|GO:0055085
Trme16427g00001 446 NCBIfam phosphate:H+ symporter 10 446 IPR004738 GO:0005315|GO:0006817|GO:0016020
Trme16427g00001 446 Gene3D MFS general substrate transporter like domains 19 446 IPR036259 -
Trme16427g00001 446 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 21 445 - -
Trme16427g00001 446 ProSiteProfiles Major facilitator superfamily (MFS) profile. 23 446 IPR020846 GO:0022857
Trme16427g00001 446 FunFam Inorganic phosphate transporter 1-6 19 446 - -
Trme16427g00001 446 CDD MFS_PhT 24 446 - -
Trme16427g00001 446 SUPERFAMILY MFS general substrate transporter 12 444 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme16427g00001 Trme-Chr16427 1 1337 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme16427g00001 1 445 Inorganic Solute Cotransporters AT3G54700 81.432 0.0 746
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme16427g00001 K08176 - gmx:100780201 791.186