Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme164220g00001 ATGCTAGTGAGAATCAACACACTTCTACAAGGCTATTCAGGCATTAGATTTGAAATCTTAGAAGCCATCACCAAGCTCCTTAACAACAATGTCACCCCATGTTTACCACTTCGTGGTACAATCACAGCTTCAGGAGATTTAGTCCCTCTTTCTTACATTGCTGGTTTACTAACTGGACGACCAAATTCAAAAGCTCACGGACCCTCTGGAGAAGTACTTAATGCAAAAGAAGCTTTTCAAGTGTCTGGAATCGATGCCGAGTTCTTTGAATTACAACCAAAAGAAGGCCTTGCACTTGTTAACGGAACTGCTGTTGGTTCTGGTTTAGCTTCTATTGTTCTGTTTGAAGCTAACATATTGGCTGTGTT 368 0.4103 MLVRINTLLQGYSGIRFEILEAITKLLNNNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAHGPSGEVLNAKEAFQVSGIDAEFFELQPKEGLALVNGTAVGSGLASIVLFEANILAV 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme164220g00001 122 Pfam Aromatic amino acid lyase 1 121 IPR001106 -
Trme164220g00001 122 Gene3D - 1 103 IPR024083 -
Trme164220g00001 122 SUPERFAMILY L-aspartase-like 1 121 IPR008948 GO:0003824
Trme164220g00001 122 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 39 55 IPR022313 GO:0016841
Trme164220g00001 122 PANTHER HISTIDINE AMMONIA-LYASE 1 122 IPR001106 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme164220g00001 Trme-Chr164220 1 368 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme164220g00001 1 122 Monolignol Biosynthesis Gene Families AT3G10340 86.066 3.64e-66 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme164220g00001 K10775 - gmx:100803857 223.402