LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trme164156g00001	GGTAAGGCTGCTCATTTGGTCGACAGCACTAACCAAGTTGGTCATTTCCAACAGGTGTTGACAGCAATAGGTAACTTCTGCATTTGCTCAATTGCTTTGGGAATGATCATCGAGATTGTTGTCATGTATCCAATTCAGCGCCGAAAGTATAGAAGTGGAATCGACAATCTCTTGGTGCTTCTCATTGGAGGGATTCCAATTGCCATGCCAACAGTTTTGTCAGTTACCATGGCTATTGGTTCACATAGGTTGTCTGAGCAAGGCGCTATCACAAAGAGGATGACAGCCATTGAAGAAATGGCTGGGATGGATGTTTTATGTAGTGACAAAACTGGAACTTTAACACTTAACAAACTTACTGTAGACAAGAATCTGATTGAGGTATTTTCAAGAGATACCGACAAGGACATG	411	0.4209	GKAAHLVDSTNQVGHFQQVLTAIGNFCICSIALGMIIEIVVMYPIQRRKYRSGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSEQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFSRDTDKDM	137

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trme164156g00001	137	Pfam	E1-E2 ATPase	1	86	-	-
	Trme164156g00001	137	ProSitePatterns	E1-E2 ATPases phosphorylation site.	109	115	IPR018303	-
	Trme164156g00001	137	PANTHER	CALCIUM-TRANSPORTING ATPASE	1	136	-	-
	Trme164156g00001	137	Gene3D	-	1	111	-	-
	Trme164156g00001	137	SUPERFAMILY	Calcium ATPase, transmembrane domain M	8	102	IPR023298	-
	Trme164156g00001	137	FunFam	Phospholipid-transporting ATPase IC	104	116	-	-
	Trme164156g00001	137	NCBIfam	HAD-IC family P-type ATPase	3	126	IPR001757	GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887

Showing 1 to 7 of 7 entries

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trme164156g00001	Trme-Chr164156	12	511	Dispersed

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trme164156g00001	1	136	Primary Pumps ATPases	AT2G07560	91.176	4.45e-84	262

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trme164156g00001	K01535		-	aew:130780353	256.144

Showing 1 to 1 of 1 entries