Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme16410g00001 ATGGGAGATGAAATCAAGGAAAAGGTGAGAGAAGGTGAATTAGAAAAGAAAATCAAGTATAGAGGAGTAAGAGTAAGGCCATGGGGAAAATTTGCGGCAGAGATTCGAGATTCGGCTAGGCATGGAGCTCGAGTTTGGCTTGGTACATTTAATACTGCTGAGGAAGCTGCGAGAGCTTACGATCGTGCTGCTTTTGATATGAGAGGTTCTTCGGCTATTCTCAACTTTCCACATGAACATTTTCCATGCAATGTGGTTTGTAATCCTTCTAAGCCCTCTTCTTCTTCGAATTCAACCTCATCATCTTCAAAGGTTAAATCAAAGCTTGATGAACAAGTTATAGAGTTTGAGTATTTGGATGAAAAATTGTTAGAGGAACTCTTGGATTGTGAGAATACCATCAATCACAACTGGTTCAAGTAG 423 0.3995 MGDEIKEKVREGELEKKIKYRGVRVRPWGKFAAEIRDSARHGARVWLGTFNTAEEAARAYDRAAFDMRGSSAILNFPHEHFPCNVVCNPSKPSSSSNSTSSSSKVKSKLDEQVIEFEYLDEKLLEELLDCENTINHNWFK 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme16410g00001 140 FunFam Ethylene-responsive transcription factor 2 19 78 - -
Trme16410g00001 140 PANTHER DNA-BINDING DOMAIN 14 129 IPR044808 GO:0003700|GO:0009873
Trme16410g00001 140 Pfam AP2 domain 19 69 IPR001471 GO:0003700|GO:0006355
Trme16410g00001 140 MobiDBLite consensus disorder prediction 89 108 - -
Trme16410g00001 140 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Trme16410g00001 140 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Trme16410g00001 140 SUPERFAMILY DNA-binding domain 19 79 IPR016177 GO:0003677
Trme16410g00001 140 SMART rav1_2 19 83 IPR001471 GO:0003700|GO:0006355
Trme16410g00001 140 MobiDBLite consensus disorder prediction 89 107 - -
Trme16410g00001 140 Gene3D AP2/ERF domain 18 78 IPR036955 GO:0003700|GO:0006355
Trme16410g00001 140 ProSiteProfiles AP2/ERF domain profile. 19 77 IPR001471 GO:0003700|GO:0006355
Trme16410g00001 140 CDD AP2 19 78 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme16410g00001 Trme-Chr16410 343 765 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme16410g00001 15 131 AP2-EREBP Transcription Factor Family AT3G23230 60.331 2.56e-42 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme16410g00001 AP2 4.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme16410g00001 - - cam:101512924 177.178