Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme163840g00001 ATGATGCGCAAAGAAATTGAAGTGCTTGGAATGTATAAGCATCGAAACTTAATCAAATACGCAGACTATTGGATTGGAGCTGACTACGGTTTAGTCTTATATGAATTCATAGAAAATGGAAGCCTTCATGATATTTTGCATGAAAAGAATCCCCCACCACCCTTAACGTGGAAAGCCAGATTTAACATAGCTGTTGGAATTGCTGAAGGAATTGCATATCTGCATAATAATTGTGTCCCACCCATAGTGCATCGAGACATTAAACCAAAAAATATTCTTATTGATGATAATATGGAGCCAATTATAGCTGATTTTGGTACTGCCCTATACAGGAAGTTGTCTGAAGATTCTTATAGTTATTCGGAAACCAGGAAAATGCTTTCAACGATCGTTGTTGGTACCCCTGGCTATATTGCTCCAG 421 0.3777 MMRKEIEVLGMYKHRNLIKYADYWIGADYGLVLYEFIENGSLHDILHEKNPPPPLTWKARFNIAVGIAEGIAYLHNNCVPPIVHRDIKPKNILIDDNMEPIIADFGTALYRKLSEDSYSYSETRKMLSTIVVGTPGYIAP 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme163840g00001 140 SUPERFAMILY Protein kinase-like (PK-like) 2 140 IPR011009 -
Trme163840g00001 140 SMART tyrkin_6 1 138 IPR020635 GO:0004713|GO:0006468
Trme163840g00001 140 Pfam Protein kinase domain 2 140 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme163840g00001 140 ProSitePatterns Serine/Threonine protein kinases active-site signature. 82 94 IPR008271 GO:0004672|GO:0006468
Trme163840g00001 140 Gene3D Transferase(Phosphotransferase) domain 1 1 140 - -
Trme163840g00001 140 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 4 140 - -
Trme163840g00001 140 ProSiteProfiles Protein kinase domain profile. 1 140 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme163840g00001 140 ProSiteProfiles KilA-N domain profile. 1 40 IPR017880 -
Trme163840g00001 140 FunFam Os07g0541700 protein 37 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme163840g00001 Trme-Chr163840 37 457 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme163840g00001 2 140 Receptor kinase-like Gene Family AT1G17750 51.429 4.87e-45 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme163840g00001 Pkinase 6.5e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme163840g00001 - - tpra:123922286 293.123