Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme163782g00001 ATGCAGAAGCAGCAGAACGATGTGCCAATGCTTGAGAAAATGGATGAGACGTTGTTGGATGCAATGTGTGATAGAATGAAACCAGTTTTGTATACAGAGAAGAGTTACATTGTCCGTGAAGAAGATCCGGTTGATGAAATGATTTTCATTATGCGTGGAAAAGTCGTTATCATGACAACAAATGGTGGAACAACTGATTTCTTCAACTCATGCTTTCTAAGACCTGGTGATTTTTGTGGAGAAGAACTT 249 0.3896 MQKQQNDVPMLEKMDETLLDAMCDRMKPVLYTEKSYIVREEDPVDEMIFIMRGKVVIMTTNGGTTDFFNSCFLRPGDFCGEEL 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme163782g00001 83 Pfam Cyclic nucleotide-binding domain 30 81 IPR000595 -
Trme163782g00001 83 SUPERFAMILY cAMP-binding domain-like 7 82 IPR018490 -
Trme163782g00001 83 CDD CAP_ED 10 82 IPR000595 -
Trme163782g00001 83 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 7 83 - -
Trme163782g00001 83 ProSiteProfiles cAMP/cGMP binding motif profile. 10 83 IPR000595 -
Trme163782g00001 83 Gene3D Jelly Rolls 8 83 IPR014710 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme163782g00001 Trme-Chr163782 1 328 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme163782g00001 8 83 Ion Channels AT5G53130 75.000 3.89e-37 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme163782g00001 K05391 - gmx:100797784 137.117