Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme163682g00001 ATGTATCATCTCACTGGTCATCGGAATATTGTTGAGCTTAAAGGTGCTTATGAGGATCGTCATTCAGTTAACCTTATTATGGAGCTTTGTGCTGGAGGTGAACTCTTTGATCGGATTATATCTAAAGGTCATTACTCTGAGCGTGCTGCGGCCGAGATGTGTCGCCAGATGGTGGCTGTTGTTCATAATTGTCACTCTATGGGTGTTATTCATAGGGATTTGAAGCCGGAGAATTTCTTGCTTCTTAATAAGCATGAGAATTCGCCACTTAAAGCCACTGATTTCGGTCTCTCCGTGTTTTTCAAGCCAG 310 0.429 MYHLTGHRNIVELKGAYEDRHSVNLIMELCAGGELFDRIISKGHYSERAAAEMCRQMVAVVHNCHSMGVIHRDLKPENFLLLNKHENSPLKATDFGLSVFFKP 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme163682g00001 103 Pfam Protein kinase domain 5 101 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme163682g00001 103 ProSiteProfiles Protein kinase domain profile. 1 103 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme163682g00001 103 Gene3D Phosphorylase Kinase; domain 1 1 34 - -
Trme163682g00001 103 ProSitePatterns Serine/Threonine protein kinases active-site signature. 69 81 IPR008271 GO:0004672|GO:0006468
Trme163682g00001 103 Gene3D Transferase(Phosphotransferase) domain 1 35 103 - -
Trme163682g00001 103 SUPERFAMILY Protein kinase-like (PK-like) 3 101 IPR011009 -
Trme163682g00001 103 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 102 - -
Trme163682g00001 103 SMART serkin_6 1 101 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme163682g00001 Trme-Chr163682 77 386 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme163682g00001 1 103 EF-hand Containing Proteins AT4G23650 87.379 4.00e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trme163682g00001 Pkinase 1.3e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme163682g00001 K13412 - pvy:116131239 199.519