Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme163647g00001 ATGCAGGTCATTGATGTTCTTCATCCTGGAAGGGCAAATGTTTCCAAGGCTGAGCTAAAGGAGAAGCTTGCAAGAATCTATGATGTCAAGGACCCAAACACCGTGTTCGTCTTCAAGTTCAGAACTCATTTTGGTGGTGGCAAGTCTACCGGTTTTGGTTTGATCTATGATTCTGTTGAGAATGCTAAGAAATATGAACCAAAATACAGACTTATCAGG 219 0.4155 MQVIDVLHPGRANVSKAELKEKLARIYDVKDPNTVFVFKFRTHFGGGKSTGFGLIYDSVENAKKYEPKYRLIR 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme163647g00001 73 ProSitePatterns Ribosomal protein S24e signature. 44 66 IPR018098 -
Trme163647g00001 73 Pfam Ribosomal protein S24e 3 73 IPR001976 GO:0003735|GO:0005840|GO:0006412
Trme163647g00001 73 PANTHER 40S RIBOSOMAL PROTEIN S24 3 73 IPR001976 GO:0003735|GO:0005840|GO:0006412
Trme163647g00001 73 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 3 73 IPR012678 GO:0003735|GO:0005840|GO:0006412
Trme163647g00001 73 Gene3D - 2 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme163647g00001 Trme-Chr163647 24 349 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme163647g00001 3 73 Cytoplasmic Ribosomal Protein Gene Family AT5G28060 87.324 1.08e-44 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme163647g00001 K02974 - pvy:116133712 144.05