Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme163536g00001 ATGGCTGCTTGCATTGCAGTGGAGGCAATATCAATTCTTGAGAAGCTCCATTTGAAAGGGTTTGTGCATGGAGATGTAAAACCAGAAAACTTTTTGCTTGGTCAACCTGGAACGGCTGATGATAAGAAGTTATATCTTATTGATCTTGGTTTAGCTTCTAAATGGAAGGATGCATCATCTGGTCAACACGTTGAATATGATCAGAGACCTGATATATTCAG 221 0.3937 MAACIAVEAISILEKLHLKGFVHGDVKPENFLLGQPGTADDKKLYLIDLGLASKWKDASSGQHVEYDQRPDIF 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme163536g00001 73 ProSitePatterns Serine/Threonine protein kinases active-site signature. 21 33 IPR008271 GO:0004672|GO:0006468
Trme163536g00001 73 PANTHER CASEIN KINASE-RELATED 2 63 - -
Trme163536g00001 73 Pfam Protein kinase domain 7 63 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme163536g00001 73 SUPERFAMILY Protein kinase-like (PK-like) 2 71 IPR011009 -
Trme163536g00001 73 ProSiteProfiles Protein kinase domain profile. 1 73 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme163536g00001 73 Gene3D Transferase(Phosphotransferase) domain 1 1 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme163536g00001 Trme-Chr163536 16 483 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme163536g00001 2 52 EF-hand Containing Proteins AT2G46700 43.137 8.95e-08 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Trme163536g00001 Pkinase 1.9e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme163536g00001 - - tpra:123890076 151.754