Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1634g00001 ATGCTGGACCATCCAAATATTGTTGCCCTGAGGCATTGTTTCTTTTCGACAACTGACAAAGAAGAGCTTTACTTGAATCTCGTACTTGAATATGTTCCTGAAACGGTGAATCGTGTTGCCAGGAACTATAGCAGGATTAATCAGCGAATGCCTTTAATATACGTGAAACTTTATACGTACCAGATATGCAGGGCACTTGCTTATATACATAATTGCATTGGCATATGTCACCGCGACATCAAACCTCAGAACCTACTTGTGAACCCACACACCCATCAGCTGAAACTATGTGATTTTGGTAGTGCGAAAGTGTTGGTGAAAGGAGAACCTAATGTTTCGTATATCTGTTCAAGATACTATCGTGCCCCAGAACTTATATTTGGTGCGACTGAATATACAACTGCCATAGATATATGGTCAACTGGTTGTGTAATGGCTGAATTACTTCTTGGACAGCCTTTGTTTCCCGGGGAGAGTGGAGTTGATCAGCTAGTTGAAATCATCAAGGTTTTGGGAACTCCTACCAGGGAGGAGATAAAGTGCATGAACCCAAATTATACTGAATTTAAGTTTCCCCAGATAAAACCTCATCCATGGCACAAGGTTTACTCTCTTGCGCTTTGCTTGCATTCTGATGTTTATTGTTAA 648 0.409 MLDHPNIVALRHCFFSTTDKEELYLNLVLEYVPETVNRVARNYSRINQRMPLIYVKLYTYQICRALAYIHNCIGICHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVKGEPNVSYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPHPWHKVYSLALCLHSDVYC 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1634g00001 215 CDD STKc_GSK3 1 204 IPR039192 -
Trme1634g00001 215 SMART serkin_6 1 200 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme1634g00001 215 Gene3D Transferase(Phosphotransferase) domain 1 34 212 - -
Trme1634g00001 215 ProSitePatterns Serine/Threonine protein kinases active-site signature. 75 87 IPR008271 GO:0004672|GO:0006468
Trme1634g00001 215 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 204 - -
Trme1634g00001 215 Pfam Protein kinase domain 2 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme1634g00001 215 SUPERFAMILY Protein kinase-like (PK-like) 2 210 IPR011009 -
Trme1634g00001 215 ProSiteProfiles Protein kinase domain profile. 1 213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme1634g00001 215 FunFam Shaggy-related protein kinase kappa 34 211 - -
Trme1634g00001 215 Gene3D Phosphorylase Kinase; domain 1 1 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1634g00001 Trme-Chr1634 469 2737 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1634g00001 5 196 Core Cell Cycle Gene Families AT1G76540 37.056 2.31e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Trme1634g00001 Pkinase 1.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1634g00001 K03083 - vvi:100252299 420.239