Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme16344g00001 TATGCTCAATATGGAGACGTTTCTCCCAAAGTAGATGTTTATGCCTTTGGAGTTGTTCTTTATGAACTTATTTCGGCAAAGGAAGCAATCGTCAAGTCGAGCGAATCTGTTACTGCAGACTCAAAGGGACTTGTTGGTCTGTTTGAAGGAGTTCTTAATCAACCTGATCCTACAGAAGATCTTCGCAAACTAGTGGATCCAAGGCTTGGAGATAACTACCCTGTAGATTCAGTTCGCAAGATGGCTCAACTAGCTAAAGCGTGTACGCAGGAAAATCCTCAACTGCGTCCGAGTATGAGATCCATTGTAGTTGCTCTTATGACACTTTCTTCATCCACGGACGATTGGGATGTTGGCTCCTTTTACGAAAATCAAAATCTTGTGAATCTCATGTCAGGAAGATAG 405 0.4247 YAQYGDVSPKVDVYAFGVVLYELISAKEAIVKSSESVTADSKGLVGLFEGVLNQPDPTEDLRKLVDPRLGDNYPVDSVRKMAQLAKACTQENPQLRPSMRSIVVALMTLSSSTDDWDVGSFYENQNLVNLMSGR 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme16344g00001 134 Gene3D Transferase(Phosphotransferase) domain 1 1 127 - -
Trme16344g00001 134 SUPERFAMILY Protein kinase-like (PK-like) 3 110 IPR011009 -
Trme16344g00001 134 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 1 120 IPR044812 GO:0019199|GO:0045087
Trme16344g00001 134 ProSiteProfiles Protein kinase domain profile. 1 109 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme16344g00001 134 Pfam Protein tyrosine and serine/threonine kinase 4 105 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme16344g00001 Trme-Chr16344 477 1074 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme16344g00001 4 134 Receptor kinase-like Gene Family AT3G21630 68.702 7.32e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trme16344g00001 PK_Tyr_Ser-Thr 2e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme16344g00001 K13429 - gmx:100777781 243.047