Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme163422g00001 GTGTTCGATTACATGGAGCATGATTTAGCTGGACTTGCTGCAAGCCCGGTAATCAGGTTTACACAGCCTCAGATAAAATGTTACATGCGTCAGCTGTTATCRGGACTTAAGCATTGTCATAACCGTCATGTACTTCACCGTGATATTAAAGGATCAAATCTTCTTATTGACAATGAAGGAATACTTAAGATTGCTGACTTTGGATTGGCATCCTTTTTTGATCCAGACCATACGCATCCGATGACTAGTCGTGTAGTAACACTTTGGTATCGACCTCCTGAGTTGCTTCTTGGTGCCACAGATTATGGTGTGGGTGTAGACCTTTGGAGTGCCGGATGTATTCTAGGAGAGTTACTGGCTGGAAAACCAATTATGCCCGGCCGTACAGAGGTGACA 396 0.4394 VFDYMEHDLAGLAASPVIRFTQPQIKCYMRQLLSGLKHCHNRHVLHRDIKGSNLLIDNEGILKIADFGLASFFDPDHTHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILGELLAGKPIMPGRTEVT 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme163422g00001 132 ProSitePatterns Serine/Threonine protein kinases active-site signature. 44 56 IPR008271 GO:0004672|GO:0006468
Trme163422g00001 132 Pfam Protein kinase domain 1 129 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme163422g00001 132 SUPERFAMILY Protein kinase-like (PK-like) 1 131 IPR011009 -
Trme163422g00001 132 ProSiteProfiles Protein kinase domain profile. 1 132 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme163422g00001 132 FunFam Mitogen-activated protein kinase 5 132 - -
Trme163422g00001 132 Gene3D Transferase(Phosphotransferase) domain 1 5 131 - -
Trme163422g00001 132 PANTHER CELL DIVISION PROTEIN KINASE 1 131 - -
Trme163422g00001 132 SMART serkin_6 1 132 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme163422g00001 Trme-Chr163422 1 514 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme163422g00001 1 130 Core Cell Cycle Gene Families AT5G64960 70.769 1.41e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Trme163422g00001 Pkinase 1e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme163422g00001 K08819 - gmx:100786837 257.684