Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme163374g00001 ATGCCTGTTGATGCTTTAACATTCTTTGCTTCAGTAGTTTTAGTGAGGTTACTTAATCTTTCTGCTATATTTTGGATGTTACAGGTGATAGCAGTTGGTCCAGGGCCTGTGGATGATGAAGGCAACCGAAAACCATTATCCATTACACCCGGTAATACAGTTCTCTACTCCAAATATGCAGGGAATGACTTCAAGGGCAAAGATGGTTCTGACTATATTGCTTTGAGAGCCTCAGATGTCATTGCTATCCTCTCTTAG 258 0.4109 MPVDALTFFASVVLVRLLNLSAIFWMLQVIAVGPGPVDDEGNRKPLSITPGNTVLYSKYAGNDFKGKDGSDYIALRASDVIAILS 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme163374g00001 85 CDD cpn10 28 84 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trme163374g00001 85 Gene3D GroES chaperonin 26 85 IPR037124 GO:0006457
Trme163374g00001 85 PANTHER 10 KDA HEAT SHOCK PROTEIN 26 83 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trme163374g00001 85 PRINTS 10kDa chaperonin signature 14 35 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trme163374g00001 85 PRINTS 10kDa chaperonin signature 49 61 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trme163374g00001 85 PRINTS 10kDa chaperonin signature 71 84 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trme163374g00001 85 Pfam Chaperonin 10 Kd subunit 28 83 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trme163374g00001 85 SMART Cpn10_2 13 84 IPR020818 GO:0005524|GO:0006457|GO:0044183
Trme163374g00001 85 SUPERFAMILY GroES-like 28 84 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme163374g00001 Trme-Chr163374 171 428 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme163374g00001 29 85 Calmodulin-binding Proteins AT5G20720 77.193 2.14e-25 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme163374g00001 K04078 - gmx:100804915 110.923