Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme16328g00001 ATGATCAATGAACGACTTTGCACGAAACGGGCACTTGTTGTACTTGATGATGTGAGTACATGTGAGCAATTAAATTCACTATGCGGAAGTCGAAATGGGATTGGTCCGGGAAGTATAATAATCATCACAACAAGAGATGTGCGTGTACTCCTTGGAGTTGACTTTATTTATGAAGCGGAGGTATTGAATCTGCATGAGTCCCTTGAGCTTTTCAATTGGCATGCTTTTAGGGAGGTGAGTCCAACCGACGATTTCCTTATTCTCTCAAGATATGTAGTTTCTTATTGTGGTGGACTACCACTTGCTCTTGAAGTCCTTGGATCTTACTTGTTCAAGAGGACAAAAGAAGAGTGGCAGAGTGTATTATCAAAGCTAGAAAAGATACCCAATGATAAAATACACGAGAAACTAAAAATAAGCTTCGATGGTTTAAATGATCGTATGGAAAAGGATATATTTCTTGATGTCTGTTGTTTCTTTATTGGTAAGGATAGAGCTTATGTTACCGAGATACTAAATGGCTGTGGACTTCATGCTGATATTGGAATAACGGTGCTGATAGAGCGAAGCCTCATAAAAGTTGAAAAGAATAACAAGCTTGGAATGCATGATTTGCTACGAGAAATGGGAAGAGAAATTGTTCGTGAAAGTTCACCTGATGAGCCTGAGAAGCGTAGCCGACTGTGGTTTCATGACGATGTAGTTGATGTATTGACCGACCATACCGTAAGAATTTCTCTACATCGTGTTTTAATTTCTATTTACTTATAA 771 0.3865 MINERLCTKRALVVLDDVSTCEQLNSLCGSRNGIGPGSIIIITTRDVRVLLGVDFIYEAEVLNLHESLELFNWHAFREVSPTDDFLILSRYVVSYCGGLPLALEVLGSYLFKRTKEEWQSVLSKLEKIPNDKIHEKLKISFDGLNDRMEKDIFLDVCCFFIGKDRAYVTEILNGCGLHADIGITVLIERSLIKVEKNNKLGMHDLLREMGREIVRESSPDEPEKRSRLWFHDDVVDVLTDHTVRISLHRVLISIYL 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme16328g00001 256 Gene3D - 1 55 IPR027417 -
Trme16328g00001 256 Gene3D - 61 145 IPR042197 -
Trme16328g00001 256 Pfam NB-ARC domain 1 131 IPR002182 GO:0043531
Trme16328g00001 256 PRINTS Disease resistance protein signature 96 110 - -
Trme16328g00001 256 PRINTS Disease resistance protein signature 5 19 - -
Trme16328g00001 256 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 238 IPR044974 GO:0006952
Trme16328g00001 256 SUPERFAMILY "Winged helix" DNA-binding domain 131 238 IPR036390 -
Trme16328g00001 256 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 155 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme16328g00001 Trme-Chr16328 671 1441 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme16328g00001 1 229 WRKY Transcription Factor Family AT5G45050 39.224 4.49e-42 151