Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme163246g00001 TCATTGGGTCAGACATCCCCATGCTTAGATGCATTTGCTGCAGGACAAGCAGCAGCATATAAAATGCTCGAGACTATTAAAAGAAAGCCTAAAATTGATCCATATGACACAAGCGGCGTTGTTTTGGAAGATATAAAGGGAGATATTGAACTTAAAGATGTTTACTTCAGATACCCTGCAAGGCCAGATGTGCAGATATTTGTCGGATTCTCACTGTTTGTTCCAAATGGAACAACTACTGCTTTGGTTGGTCAAAGTGGAAGTGGAAAGTCCACTGTGATTAGTTTATTGGAAAGATTCTATGACCCTGATGCTGGAGAAGTGCTTATAGATGGTGTTAATTTGAAGAACTTGCAACTTAAAGGGATAAGGGAACAAATTGGGTTGGTTAGTCA 395 0.3975 SLGQTSPCLDAFAAGQAAAYKMLETIKRKPKIDPYDTSGVVLEDIKGDIELKDVYFRYPARPDVQIFVGFSLFVPNGTTTALVGQSGSGKSTVISLLERFYDPDAGEVLIDGVNLKNLQLKGIREQIGLVS 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme163246g00001 131 PANTHER ABC TRANSPORTER B FAMILY 1 131 IPR039421 -
Trme163246g00001 131 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 39 130 IPR027417 -
Trme163246g00001 131 Gene3D - 47 131 IPR027417 -
Trme163246g00001 131 Gene3D ABC transporter type 1, transmembrane domain 1 46 IPR036640 GO:0005524|GO:0016020
Trme163246g00001 131 Pfam ABC transporter 70 130 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme163246g00001 Trme-Chr163246 120 514 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme163246g00001 1 131 Calmodulin-binding Proteins AT2G36910 55.725 1.88e-39 138