Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme16313g00001 GCAGACGTTGAGGTCGATGCAGCAATAACAACCGTCGGAATCCCAAAGAAGAGAACGTTCAAAAAGTTCACTTTCAAAGGAGTTGATATGGTTGCTCTTCTTGACATGGCCACCGCTGAGCAAGTCAAGCTCTTCAATGCTCGTGCTCGTAGAAGGTTCCAGAGAGGTCTCACCAGAATGCCATTGTCTCTCATCAAAAGGCTTCGCAAAGCGAAAATGGAAGTACCAGCTGGTGAGAAGCCGAAACCTGTTAGGACCCATCTTCGTAACATGATTATTGTACCTGAGATGATTGGGAGCATTATTG 307 0.4625 ADVEVDAAITTVGIPKKRTFKKFTFKGVDMVALLDMATAEQVKLFNARARRRFQRGLTRMPLSLIKRLRKAKMEVPAGEKPKPVRTHLRNMIIVPEMIGSII 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme16313g00001 102 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 13 102 IPR002222 GO:0003735|GO:0005840|GO:0006412
Trme16313g00001 102 SUPERFAMILY Ribosomal protein S19 61 102 IPR023575 GO:0003735|GO:0005840|GO:0006412
Trme16313g00001 102 Gene3D 30s Ribosomal Protein S19; Chain A 9 102 IPR023575 GO:0003735|GO:0005840|GO:0006412
Trme16313g00001 102 Pfam Ribosomal protein S19 51 102 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme16313g00001 Trme-Chr16313 1 727 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme16313g00001 1 102 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 72.549 1.19e-45 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme16313g00001 K02958 - gmx:100499657 153.295