Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme162794g00001 ATGTGGGGACATGGATCTCAATACAGAAAAGGACCAGATTCTCTAAAAGGAACACAACCAACAGCAATGTTAAGGCTTCCATGTTTTTGTTGTGCACCAGGTTGCAAGCACAACATTGATCACCCTAGAGCAAAGCCTCTTAAAGATTTTAGAACTCTTCAAACACATTATAAGAGAAAGCATGGTATTAAACCTTATTTGTGTAGAAAATGTGGCAAATCATTTGCAGTGAAAGGTGATTGGAGAACACATGAGAAGAATTGTGGCAAAATATGGTATTGTTTATGTGGTTCAGATTTTAAACATAAAAGGTCTCTTAAAGATCATATTAAAGCTTTTGGTTATGGTCATGGTGCTTTTGGTATTGATTGCTTGCAAGAAGAAGATGAAGCTGGTTCAGAAATTGAACATGATGGTGGAAGTTCAATGTGA 432 0.3634 MWGHGSQYRKGPDSLKGTQPTAMLRLPCFCCAPGCKHNIDHPRAKPLKDFRTLQTHYKRKHGIKPYLCRKCGKSFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGYGHGAFGIDCLQEEDEAGSEIEHDGGSSM 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme162794g00001 143 SUPERFAMILY beta-beta-alpha zinc fingers 52 86 IPR036236 -
Trme162794g00001 143 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 86 IPR013087 -
Trme162794g00001 143 Gene3D Classic Zinc Finger 43 117 - -
Trme162794g00001 143 PANTHER ZINC FINGER PROTEIN WIP2 1 136 IPR043584 GO:0003700|GO:0010468
Trme162794g00001 143 FunFam Zinc finger protein WIP2 35 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme162794g00001 Trme-Chr162794 39 470 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme162794g00001 1 136 C2H2 Transcription Factor Family AT3G57670 85.294 2.33e-88 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trme162794g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme162794g00001 - - gmx:100799060 311.997