Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme162732g00001 ATGGCAATCAAGGAAGAAGAAACNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNTNNNNNNNNNNGCTGAGACTGGGAAACCGCAAGGAGTGGCAGTTCGAAACTCCGGCGATGATGAACCTGGTGGAAAATTTGCTTCTAAAAGAAACTCCGGTAGAGCTTCCGGTGACTCTTCCGACGGAGGTGATGCACGTGGGGGGATACCGAGAGTTTCGGAGGATTTGAAAGATGCTTTATCGGCTTTTCAACAAACTTTTGTGGTTTCGGATGCTACCAAACCCGATTACCCGATTATGTATGCAAGTGCGGGTTTCTTCAAAATGACGGGTTATACTTCAAAAGAAGTCATAGGAAGAAACTG 371 0.3989 MAIKEEETXXXXXXXXXXXXXXXXXAETGKPQGVAVRNSGDDEPGGKFASKRNSGRASGDSSDGGDARGGIPRVSEDLKDALSAFQQTFVVSDATKPDYPIMYASAGFFKMTGYTSKEVIGRN 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme162732g00001 123 PANTHER PROTEIN TWIN LOV 1 67 123 - -
Trme162732g00001 123 MobiDBLite consensus disorder prediction 1 77 - -
Trme162732g00001 123 ProSiteProfiles PAS repeat profile. 74 123 IPR000014 -
Trme162732g00001 123 Gene3D PAS domain 70 123 - -
Trme162732g00001 123 SUPERFAMILY PYP-like sensor domain (PAS domain) 95 123 IPR035965 -
Trme162732g00001 123 Coils Coil 3 8 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme162732g00001 Trme-Chr162732 10 380 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme162732g00001 26 123 AGC Kinase Gene Family AT3G45780 72.642 2.30e-41 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme162732g00001 K20715 - gmx:100804524 142.51