Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme162104g00001 ATGCATGTAGATGAAGATCAATTATCAGATGATGAAGGTTACTCACAACTTGGTGAAAAGAAGAAGAGGCTGAGTTTAGAACAAGTGAAGGCACTTGAGAAGAGTTTTGAGATTGGAAATAAACTTGAACCTGATAGGAAAATGCAATTGGCTAAAGCTTTGGGGTTACAACCTAGACAAGTAGCTATATGGTTTCAAAATAGAAGAGCAAGGTGGAAAACAAAGCAACTTGAGAAAGAATATGAAGTTCTTAAGAAGCAATTTGAATCTCTTAAGGCTGATAATGATTCCCTTAAGGCTCAAAATCATAAACTTCATGCAGAGTTCTGGTTGCGGTTATTGTGA 345 0.3623 MHVDEDQLSDDEGYSQLGEKKKRLSLEQVKALEKSFEIGNKLEPDRKMQLAKALGLQPRQVAIWFQNRRARWKTKQLEKEYEVLKKQFESLKADNDSLKAQNHKLHAEFWLRLL 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme162104g00001 114 CDD homeodomain 20 76 IPR001356 GO:0003677
Trme162104g00001 114 PRINTS Lambda-repressor HTH signature 55 71 IPR000047 GO:0003677
Trme162104g00001 114 PRINTS Lambda-repressor HTH signature 46 55 IPR000047 GO:0003677
Trme162104g00001 114 SMART HOX_1 18 79 IPR001356 GO:0003677
Trme162104g00001 114 ProSiteProfiles 'Homeobox' domain profile. 15 75 IPR001356 GO:0003677
Trme162104g00001 114 SUPERFAMILY Homeodomain-like 14 77 IPR009057 -
Trme162104g00001 114 ProSitePatterns 'Homeobox' domain signature. 50 73 IPR017970 GO:0000981|GO:0006355
Trme162104g00001 114 Pfam Homeodomain 20 73 IPR001356 GO:0003677
Trme162104g00001 114 FunFam Homeobox-leucine zipper protein ATHB-13 11 79 - -
Trme162104g00001 114 Coils Coil 67 108 - -
Trme162104g00001 114 Gene3D - 13 83 - -
Trme162104g00001 114 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 11 109 IPR045224 GO:0003700
Trme162104g00001 114 Pfam Homeobox associated leucine zipper 75 108 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme162104g00001 Trme-Chr162104 32 455 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme162104g00001 4 109 Homeobox Transcription Factor Family AT5G15150 78.302 3.32e-54 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trme162104g00001 Homeodomain 5.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme162104g00001 K09338 - gmx:100816097 181.03