Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme16192g00001 ATGGACGACGACGACGAGATCCATTCCAATCCATCACCGTTAAGCGGATCTCCGGTGTCGTCACCGGGAGCAATTGGTAGGATTTCGGTGACGGTTGCGGCACCGGCGCCGGAATCTCATCCAGCGACGAACAGCTATGCATTAGCGCTTCCGATTCAGAATCAGGTAAGAGGAAACAACGGTGGAGGGAGGGAGGATTGTTGGAGCGAAGGCGCAACGGCGGTTCTGATCGAAGCGTGGGGAGAGAGGTATATGGAATTGAGCAGAGGGAATCTGAAGCAAAAGCATTGGAAAGAGGTGGCGGAGATCGTTAATGGAAGAGAGGATTATTTGAAAGCGCCGAAAACCGATATTCAGTGCAAAAACCGGATCGATACAGTTAAGAAGAAGTATAAATCGGAGAAAGCTAAGATCGCCGCCGGAGGTGGCGTCACAACCAGTAAATGGCCGTTTTATGACCGATTAGATCAGTTGATCGGACCAACCGCCAAGATCACCGGTAGCACATCCGCCGGTAACAGTAATTTACCACCGCATAAAGTTCCGTTAGGTATTCCGGTCGGTCTTCGCGCCGGTGGTGTTGCGAATCAGTTTAATTCTCAAAAGAAAAATACAAAACCACAGCCACAACTACAGCCGCAGTTGAATTATCAGAAGGTTCAGCTTCGGCCGCGAGTTCTGGCTGTGGATTCNNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNANNNNNNNNNNAGTGATGAATTCGAATGCTGCGAAAGGAACAGAAGGAAGAAAGAAAGGTTGGGGGAGTGCGGTGAGGGAATTGACTCATGCAATTGTGAAATTCGGGGAGGTTTATGAACAAGCGGAGACATCGAAGTTGCAGCAGGTGGTGGAGATGGAGAAGCAGAGGATGAAGTTTGCTAAGGATTTGGAGTTGCAGAGAATGCAGTTTTTCATGAAAACACAGGTAGAGATTTCACAGCTTAA 1016 0.4478 MDDDDEIHSNPSPLSGSPVSSPGAIGRISVTVAAPAPESHPATNSYALALPIQNQVRGNNGGGREDCWSEGATAVLIEAWGERYMELSRGNLKQKHWKEVAEIVNGREDYLKAPKTDIQCKNRIDTVKKKYKSEKAKIAAGGGVTTSKWPFYDRLDQLIGPTAKITGSTSAGNSNLPPHKVPLGIPVGLRAGGVANQFNSQKKNTKPQPQLQPQLNYQKVQLRPRVLAVDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVMNSNAAKGTEGRKKGWGSAVRELTHAIVKFGEVYEQAETSKLQQVVEMEKQRMKFAKDLELQRMQFFMKTQVEISQL 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme16192g00001 338 Gene3D - 68 133 - -
Trme16192g00001 338 MobiDBLite consensus disorder prediction 1 22 - -
Trme16192g00001 338 FunFam trihelix transcription factor ASIL2 68 133 - -
Trme16192g00001 338 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 42 338 IPR044823 -
Trme16192g00001 338 Pfam Myb/SANT-like DNA-binding domain 65 158 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme16192g00001 Trme-Chr16192 454 1469 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme16192g00001 1 338 Trihelix Transcription Factor Family AT3G14180 42.131 7.92e-83 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trme16192g00001 Myb_DNA-bind_4 7.4e-26 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme16192g00001 - - cam:101508093 420.239