Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1616g00001 ATGTATTGTGAGGAAACATGGAATAAAGGCAACATAAAGGTAAATAGAAGCATTGGTTATGCTCATTTTAAGGACCATCCGATCAATTCATTGCGAAGGTTACCAGAAATTGAACAGATAACTCAAGTTTTAGTATCTGCAAAACCTGAATTACATTCAAGAAAAATTAGAAAGGGTGATAGGTTTCTCATACTTGCATCTCATGGATTTTGGAATTTCATGACCAATGAGAATGCAGCTAATATTGTAAACCGCAATCCCCGAGATGAAATTGCAAAAAGACTTTTGAGTGCTGCTCTAGAAAAGGCAACTGAAAAAAGAGGAGCGAAGGGTGTTTATGATGATATGATTATCATTGTTTTATTCTTCAGCGAAGGGTTGTCACAGAGGAAAGAGGAAGACACACCAAAGACGGTAGTGTTACATGAAGGGCCATCATATTTGAGTAATATAATCATGGCATCAGGAAAATCCGACCAATCTCGTCTGAGTCCCACTTCATCTATTCCAAATCCACGAGCTAGTGTGCCTACACTTACTCAAGGGGTAGGTTCATCAATCGGAAAAGAATGGGACATTTGCTTAAGATCCTCCGAATTTAGAAGCGACACCCATCAAAGTGGGCAGTCTGACTTGATGGAGATTAAGAAAATGTTGCAGGAGATGCAACGTGTGTTGAAGATTGAACAACAACCCTCCCAGCATCAGCTACAGCCACCTGTGTCCGCAATTCAAGAGCTAGAGATGATTGGGAAAGTTGTAAACTTAGCAAAGGGAATGTTCACGGTAGAAATGGAGAAGGGTATATTTGGTGACCTAGTTAAAGACTATATTTACGGAAATCAAATGATTGAAGTTGCCAAGCAGGATAAGTTAAGGAACCCTTGTATGCTTTTTTATGTCAGGTACTTGCATGAGGAAATCATCCGCCCACGAGAATTGTTGAATAAGTTCTCTTTCTTAAACCCATATGTAATAAGTGCAGTTGTGCTAAGACGACCGCATGAACTTGATAAAGAGAAAATCGACACTATAGCAACTGTATTCTTGGAAAGTCAGAAATTCAAGGATAAGTTGATACTTGCACCTTGCAATTTAGGGGAACGTTGGGTGTTGATTGTCATCAATGTCAATGCGGACACAATATATTACATAGATTCGTTGCATATCGAACCTACAAATTACCCCAATCTGGTTGCAAATTTTCAACAAACTTTTAAATGGCATATCAAAGAAAGAGGAGTAGTGCTCAAGTCAAATGAATTCAATTGGATAAAACCAAAGTGTCCTAAGCAACCTAATCATAAAGATTCTGGATATTATGTCATGAAATTCATGAAAGATATCATCACAAGTGCAAACGAGATCCCTGTAAATTGTTTACCCGATACCTACTCTAATGATGACTTGGATGAGGTCAAGACGGGTTGGGCTAGCTATCTGATCAATAGTATTA 1456 0.3846 MYCEETWNKGNIKVNRSIGYAHFKDHPINSLRRLPEIEQITQVLVSAKPELHSRKIRKGDRFLILASHGFWNFMTNENAANIVNRNPRDEIAKRLLSAALEKATEKRGAKGVYDDMIIIVLFFSEGLSQRKEEDTPKTVVLHEGPSYLSNIIMASGKSDQSRLSPTSSIPNPRASVPTLTQGVGSSIGKEWDICLRSSEFRSDTHQSGQSDLMEIKKMLQEMQRVLKIEQQPSQHQLQPPVSAIQELEMIGKVVNLAKGMFTVEMEKGIFGDLVKDYIYGNQMIEVAKQDKLRNPCMLFYVRYLHEEIIRPRELLNKFSFLNPYVISAVVLRRPHELDKEKIDTIATVFLESQKFKDKLILAPCNLGERWVLIVINVNADTIYYIDSLHIEPTNYPNLVANFQQTFKWHIKERGVVLKSNEFNWIKPKCPKQPNHKDSGYYVMKFMKDIITSANEIPVNCLPDTYSNDDLDEVKTGWASYLINSI 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1616g00001 485 ProSiteProfiles PPM-type phosphatase domain profile. 1 123 IPR001932 -
Trme1616g00001 485 MobiDBLite consensus disorder prediction 158 183 - -
Trme1616g00001 485 Pfam Protein phosphatase 2C 10 106 IPR001932 -
Trme1616g00001 485 Gene3D - 3 135 IPR036457 -
Trme1616g00001 485 ProSiteProfiles Ubiquitin-like protease family profile. 276 449 IPR003653 GO:0006508|GO:0008234
Trme1616g00001 485 SUPERFAMILY Cysteine proteinases 277 483 IPR038765 -
Trme1616g00001 485 Pfam Ulp1 protease family, C-terminal catalytic domain 292 476 IPR003653 GO:0006508|GO:0008234
Trme1616g00001 485 SUPERFAMILY PP2C-like 9 124 IPR036457 -
Trme1616g00001 485 Gene3D Adenoviral Proteinase; Chain A 261 484 - -
Trme1616g00001 485 PANTHER PROTEIN PHOSPHATASE 6 121 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1616g00001 Trme-Chr1616 379 2927 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1616g00001 9 136 PP2C-type Phosphatase Gene Family AT3G12620 34.932 1.80e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1616g00001 - - mtr:112421892 169.088