Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme16167g00001 | ATGGAAGCAAATAAAGAGGAAGCACTTAAGGCAGTAGAGATTGCTGAGAAGAGATTTGCTCAGAGAGACTTTGCAGGCGCGAAAAACTATGCTTTAAAGGCAAAAACACTTTGTCCTGAGTTGGAGGGTATATCTCAAATGGTGTCCACATTTGATGTTTACATTGCTTCTGAGTTCAGACATAATGGTGAACTCGATTATTATTCGGTTCTCGGACTAAAACCTACTGCAGATAAAGAAGCTGTCAAAAGACAGTACAAGAAGTTGGCAGTGTTACTTCATCCAGATAAGAACAAATGTGTCGGAGCTGATGGGGCGTTTAAGCTTGTTTCCGAGGCGTGGACTTGGCTTGACAATGCCATGCGTAGTTCTTACGATCGCAAGAGAAATTATGCTTCTTTTCATGCTACAGGTTATAACAAATGTTCCAATTTGTCGGCCTCTCGTAATAGACTAGACACATTTTGGACAATTTGTACTTCTTGTAAGGTTCAGTATGAGTATCTGCGTAAGTATGTGAATAAAAAACTCTCATGTAAGAACTGCCGTGGCATTTTCATTGCTGTTGAAACTGGAGCAGCCCCAGCAAATGGTTCGTTTCCATATACTCCTTTGCCATATGTGCCGGGAAATGGTTATGGAAATCATTCATTTGACGGGGTTACATATGTTCCTACTAATGCCACCTATTTTAATGGGAATGGTGTCGCAGGATAC | 717 | 0.41 | MEANKEEALKAVEIAEKRFAQRDFAGAKNYALKAKTLCPELEGISQMVSTFDVYIASEFRHNGELDYYSVLGLKPTADKEAVKRQYKKLAVLLHPDKNKCVGADGAFKLVSEAWTWLDNAMRSSYDRKRNYASFHATGYNKCSNLSASRNRLDTFWTICTSCKVQYEYLRKYVNKKLSCKNCRGIFIAVETGAAPANGSFPYTPLPYVPGNGYGNHSFDGVTYVPTNATYFNGNGVAGY | 239 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme16167g00001 | 239 | Pfam | DnaJ domain | 66 | 126 | IPR001623 | - | |
| Trme16167g00001 | 239 | Gene3D | DnaJ domain | 56 | 148 | IPR036869 | - | |
| Trme16167g00001 | 239 | PRINTS | DnaJ domain signature | 86 | 101 | IPR001623 | - | |
| Trme16167g00001 | 239 | PRINTS | DnaJ domain signature | 102 | 122 | IPR001623 | - | |
| Trme16167g00001 | 239 | PRINTS | DnaJ domain signature | 68 | 86 | IPR001623 | - | |
| Trme16167g00001 | 239 | SUPERFAMILY | Chaperone J-domain | 63 | 145 | IPR036869 | - | |
| Trme16167g00001 | 239 | CDD | DnaJ | 66 | 114 | IPR001623 | - | |
| Trme16167g00001 | 239 | ProSiteProfiles | dnaJ domain profile. | 66 | 129 | IPR001623 | - | |
| Trme16167g00001 | 239 | SMART | dnaj_3 | 65 | 122 | IPR001623 | - | |
| Trme16167g00001 | 239 | PANTHER | BNAC03G44070D PROTEIN | 1 | 201 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trme16167g00001 | Trme-Chr16167 | 1 | 717 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme16167g00001 | 4 | 210 | SUVH1 or 3-interacting DNAJ domain-containing protein superfamily | AT2G01710 | 33.796 | 1.45e-30 | 114 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trme16167g00001 | - | - | vun:114194067 | 414.846 |