Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme161520g00001 TTAGTGTTTGGTGTGGAAGAAAAGAAAGAACTTGTGAAAGTGGAAGAGAACAAGAAGAAGAAAAAGAAGAGGATGGGGAGCAGAGATATTGAGATTGAGAAGGTTGACAATTTGATTAGAAGACAAGTTGCCTTCTCCGAGCGACGAAAGAGTTTGTTCAAGAAAGCGAAAGAATTGTCTATTCTTTGTGATGCGGAGGTTGGTGTCATCGTATTTTCTAGCACTGGCAAGCTCTATGAGTTCTCAAGGCCAAGGTGA 258 0.4109 LVFGVEEKKELVKVEENKKKKKKRMGSRDIEIEKVDNLIRRQVAFSERRKSLFKKAKELSILCDAEVGVIVFSSTGKLYEFSRPR 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme161520g00001 85 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 37 81 IPR002100 GO:0003677|GO:0046983
Trme161520g00001 85 Coils Coil 5 25 - -
Trme161520g00001 85 ProSiteProfiles MADS-box domain profile. 25 85 IPR002100 GO:0003677|GO:0046983
Trme161520g00001 85 Gene3D - 37 85 IPR036879 GO:0003677|GO:0046983
Trme161520g00001 85 PANTHER SERUM RESPONSE FACTOR HOMOLOG 28 84 - -
Trme161520g00001 85 SUPERFAMILY SRF-like 27 84 IPR036879 GO:0003677|GO:0046983
Trme161520g00001 85 PRINTS MADS domain signature 62 83 IPR002100 GO:0003677|GO:0046983
Trme161520g00001 85 PRINTS MADS domain signature 47 62 IPR002100 GO:0003677|GO:0046983
Trme161520g00001 85 PRINTS MADS domain signature 27 47 IPR002100 GO:0003677|GO:0046983
Trme161520g00001 85 SMART madsneu2 25 84 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme161520g00001 Trme-Chr161520 207 464 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme161520g00001 25 82 MADS-box Gene Family AT2G14210 67.241 4.04e-22 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trme161520g00001 SRF-TF 8.5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme161520g00001 - K09264 tpra:123891316 116.316