Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1613g00001 CCTTCAGATCCCCCGCCGTCTCCTTCACAATCACCGCCTTCACAATCACAACCTTCTCCTCCACCACCTACATCAAACAATCCATCCCCACCATCACCCAGTGGAACGGTTCATTCTTCACCCTCCACTGGGCCCGGAAGTTCACCACCACCTCCACACAAATCATTACCAAAGATGCCAACCGAAATCTCGGATGTTCTTCTCATTTTGGTTGTCGTCTGCCTTGTTTGCTCCAGGAAGAAGAAAAGAAAGCAAACGTACTATTATGGAGATCACCCATCGCATGCACAAGGGAATAATAACTATTACAACAGTGAGCCGAACCCAAATTACTACGGAGGTCCACCTGGGGATCATGTTGTTAGGCTACAAAATGGAATGGGTCCTNGTGGAATGGGTCCTAGTGGAATGGGTCCTAATGGTGGTGGTGGTGGTTGGGGTGCACCACCACCTCCTCCTAACCTAACGAACAGTGCAGACATGAGCTCAAATTACTCAACTGGACCACCACCTTTGCCTCCTCCTTCACCAAGCCTTGCTTTAGGGCTTAAAGGAGGCACATTCACTTATGAGGAATTGGCAGCTGCAACCAATGGATTCATTGAGTCAAATTTGATAGGACAAGGTGGTTTTGGTTATGTCCATAAGGGTGTATTACCTAGTGGAAAGGAAATAGCTGTCAAGAGTTTAAAAACGGGTAGCGGACAAGGAGAACGAGAGTTCCAAGCCGAGATTGACATCATTAGTCGTGTTCATCATCGTCATCTTGTTTCACTTGTTGGATACTGTATATCTGGTGGCCAAAGAATGTTGGTCTATGAATTTATTCCAAATAACACTATGGAATATCATCTTCATGGAAAGGGTCGACCTACTATGGATTGGCCAACTAGAATGAGGATTGCAATAGGTTCTGCTAAAGGGCTTGCTTATCTTCATGAAGATTGTCATCCTCGCATCATCCATCGTGATATCAAAGCTGCAAATGTCCTTATTGATGACAGCTTTGAAGCAAAGGTTGCTGATTTTGGATTGGCTAAGTTGACAACGGATAATAATACTCATGTATCAACTCGTGTCATGGGAACATTCGGGTACCTAGCTCCTGAATATGCATCAAGTGGAAAATTGACAGAGAAGTCTGATGTTTTCTCATTTGGGGTCATGCTATTGGAACTTGTAACTGGGAAGCGACCTGTGGATGCCTCAATTACCATGGATGACAGCTTAGTGGACTGGGCTCGACCACTATTGACTCGTGGACTAGAGGATGGAAACTTTGGTGAGTTGGTGGATCCATTTTTGGAAGGAAACTACAATCCTCAAGAACTCGCTAGAATGGCAGCTTGTGCTGCCGCTAGCATTCGTCACTCTGCCAAGAAGCGTCCTAAAATGAGCCAGATTGTAAGAACATTGGAAGGAGATGTCTCATTGGATGACTTGAAGGACGGAATTAAGCCAGGGCACAGCACTATTTACACCTCTTCATCAGGTAGCTCAGAGTATGACACAATGCAGTACAACGCTGATATGCAGAAGTTCAGAAATGCAGTGTTTAACAGTAACAGCAATGACTTTGGCACCAGCAGTTTCTCCAGTGGCGATATGAACCAAACACCAAAGGCGAGGCCGCCACAACCATTGCTTTAA 1650 0.4539 PSDPPPSPSQSPPSQSQPSPPPPTSNNPSPPSPSGTVHSSPSTGPGSSPPPPHKSLPKMPTEISDVLLILVVVCLVCSRKKKRKQTYYYGDHPSHAQGNNNYYNSEPNPNYYGGPPGDHVVRLQNGMGPXGMGPSGMGPNGGGGGWGAPPPPPNLTNSADMSSNYSTGPPPLPPPSPSLALGLKGGTFTYEELAAATNGFIESNLIGQGGFGYVHKGVLPSGKEIAVKSLKTGSGQGEREFQAEIDIISRVHHRHLVSLVGYCISGGQRMLVYEFIPNNTMEYHLHGKGRPTMDWPTRMRIAIGSAKGLAYLHEDCHPRIIHRDIKAANVLIDDSFEAKVADFGLAKLTTDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELVTGKRPVDASITMDDSLVDWARPLLTRGLEDGNFGELVDPFLEGNYNPQELARMAACAAASIRHSAKKRPKMSQIVRTLEGDVSLDDLKDGIKPGHSTIYTSSSGSSEYDTMQYNADMQKFRNAVFNSNSNDFGTSSFSSGDMNQTPKARPPQPLL 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1613g00001 549 SMART serkin_6 200 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme1613g00001 549 FunFam proline-rich receptor-like protein kinase PERK1 178 275 - -
Trme1613g00001 549 MobiDBLite consensus disorder prediction 525 540 - -
Trme1613g00001 549 MobiDBLite consensus disorder prediction 92 108 - -
Trme1613g00001 549 MobiDBLite consensus disorder prediction 88 180 - -
Trme1613g00001 549 ProSitePatterns Serine/Threonine protein kinases active-site signature. 320 332 IPR008271 GO:0004672|GO:0006468
Trme1613g00001 549 Pfam Protein tyrosine and serine/threonine kinase 204 471 IPR001245 GO:0004672|GO:0006468
Trme1613g00001 549 ProSitePatterns Protein kinases ATP-binding region signature. 206 228 IPR017441 GO:0005524
Trme1613g00001 549 MobiDBLite consensus disorder prediction 525 549 - -
Trme1613g00001 549 MobiDBLite consensus disorder prediction 1 59 - -
Trme1613g00001 549 Gene3D Phosphorylase Kinase; domain 1 180 275 - -
Trme1613g00001 549 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 67 517 IPR047117 -
Trme1613g00001 549 FunFam Proline-rich receptor-like protein kinase PERK1 276 483 - -
Trme1613g00001 549 SUPERFAMILY Protein kinase-like (PK-like) 176 472 IPR011009 -
Trme1613g00001 549 ProSiteProfiles Protein kinase domain profile. 200 460 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme1613g00001 549 Gene3D Transferase(Phosphotransferase) domain 1 276 483 - -
Trme1613g00001 549 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1613g00001 Trme-Chr1613 1 2706 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1613g00001 16 535 Trihelix Transcription Factor Family AT1G70460 48.127 1.20e-154 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Trme1613g00001 PK_Tyr_Ser-Thr 5.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1613g00001 - - gmx:100777163 723.005