Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme161382g00001 ATGGCTTGTGCTGAAGCAGTTGAACAGAACAATCTAACGGTTGCAGAAGCTTTGGTGAAACAGATCGGTTACTTAGCAGTGTCACAAGAAGGTGCTATGAGAAAAGTTGCCACCTATTTCGCTGAAGGTTTAGCTCGGCGAATCTACGGTGTATTTCCACAAGTTTCTATTTCCGATTCGCTTCAGATCCATTTCTATGAAACTTGTCCTTATCTCAAATTCGCTCATTTCACTGCGAATCAAGCTATTCTTGAAGCTTTTCAAGGAAAATCTAGGGTTCATGTTATTGATTTTTCGATCAATCAAGGGATGCAATGGGCAGCGCTTATGCAAGCACTTGCTTTACGTCCTGGCTGCTCAAAAAAAAAAAAAAACTTGCTTTACGTCCTGGTGGTCCACCTGCTTTTCGTCTCACCGGAATTGGTCCACCGGCGTCTGATAACTCCGATCATCTTCTGGTGA 462 0.4307 MACAEAVEQNNLTVAEALVKQIGYLAVSQEGAMRKVATYFAEGLARRIYGVFPQVSISDSLQIHFYETCPYLKFAHFTANQAILEAFQGKSRVHVIDFSINQGMQWAALMQALALRPGCSKKKKNLLYVLVVHLLFVSPELVHRRLITPIIFW 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme161382g00001 153 ProSiteProfiles GRAS family profile. 1 153 IPR005202 -
Trme161382g00001 153 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 122 IPR005202 -
Trme161382g00001 153 Pfam GRAS domain family 1 118 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme161382g00001 Trme-Chr161382 36 497 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme161382g00001 1 118 GRAS Transcription Factor Family AT1G14920 79.675 2.06e-63 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trme161382g00001 GRAS 7e-42 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme161382g00001 K14494 - gmx:547718 193.741