Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme16123g00001 ATGATTACCGGAGCGGCCCAAATGGATGGTGGTATCCTTGTTGTATCCGCACCTGATGGACCAATGCCTCAAACCAAGGAGCACATTCTTCTAGCTCGCCAAGTTGGTGTACCATCTCTTGTGTGCTTTTTAAATAAAGTTGATGCTGTCGATGATCCAGAGTTGTTAGAGCTTGTAGAAATGGAGCTCCGTGAGCTTCTGAGCTTCTACAAGTTCCCTGGGGATGATATCCCTATCATTAGAGGTTCAGCATTGTCTGCTCTCCAAGGTACAAATGAAGAGATAGGAAGAAAGGCCATTCTAAAATTAATGGATGCTGTAGATGAATACATTCCTGACCCTGTTCGCCAGCTTGACAAGCCTTTCTTGATGCCCATTGAAGATGTATTCTCAATTCAGGGACGAGGAACAGTTGCCACTGGTCGTGTTGAGCAAGGAATTATCAAAGTTGGTGATGAAGTTGAGGTTTTGGGTCTGATGCAGGGTGGTCCTCTGAAAACAACAGTTACCGGAGTTGAGATGTTCAAGAAGATTTTGGATCAAGGACAA 549 0.4463 MITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLSFYKFPGDDIPIIRGSALSALQGTNEEIGRKAILKLMDAVDEYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGIIKVGDEVEVLGLMQGGPLKTTVTGVEMFKKILDQGQ 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme16123g00001 183 Gene3D - 1 114 IPR027417 -
Trme16123g00001 183 Gene3D Translation factors 117 183 - -
Trme16123g00001 183 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 130 IPR027417 -
Trme16123g00001 183 Pfam Elongation factor Tu GTP binding domain 1 112 IPR000795 GO:0003924|GO:0005525
Trme16123g00001 183 PANTHER ELONGATION FACTOR TU-RELATED 1 183 - -
Trme16123g00001 183 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 1 115 IPR000795 GO:0003924|GO:0005525
Trme16123g00001 183 SUPERFAMILY Translation proteins 116 182 IPR009000 -
Trme16123g00001 183 PRINTS GTP-binding elongation factor signature 3 14 IPR000795 GO:0003924|GO:0005525
Trme16123g00001 183 PRINTS GTP-binding elongation factor signature 40 49 IPR000795 GO:0003924|GO:0005525
Trme16123g00001 183 Pfam Elongation factor Tu domain 2 136 181 IPR004161 GO:0005525
Trme16123g00001 183 FunFam Elongation factor Tu 117 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme16123g00001 Trme-Chr16123 27 1411 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme16123g00001 1 179 Eukaryotic Initiation Factors Gene Family AT5G60390 34.872 2.61e-20 85.5