Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme16117g00001 ATGATTGATGTGGAGAACCCGTGCGTGATTATGAGTCAAGACAAAAGTAGAGAATTTCTGCATTCCGGGAATAACAAAGATAAATTTAAGGCCACACTTCTTCAGCAAGTCAATGATCTTCTGGAAAGCATTTCTGCTGAAATAACCTCTGCACGTGTAATAGTTGAAGAATTAGGGTCTGCAATAAGACCTATAGAGAAAGAACTCAATGAGATGCAAGTTAAAATTAAAACGATGGAACATATTGAACAAATTTCTGTAGAGGTTCAGCAGTTAAAAAAGAAACTTGCATGGTCATGGGTTTATGATGTGGACAAGAAACTCGAGGATCAAAATGTAAGGATTGAAAAGCTGAAGGATCGGATTCCTTTATGCCAAGCTAGGATTGATAAACAACTGGTATGTATGCCTACATTATCTTCTCATAGTGAAGTTTTCATTTGTCAACACAATGTGAAGTTCTCTGTGCTTTGA 474 0.3671 MIDVENPCVIMSQDKSREFLHSGNNKDKFKATLLQQVNDLLESISAEITSARVIVEELGSAIRPIEKELNEMQVKIKTMEHIEQISVEVQQLKKKLAWSWVYDVDKKLEDQNVRIEKLKDRIPLCQARIDKQLVCMPTLSSHSEVFICQHNVKFSVL 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme16117g00001 157 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6 2 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme16117g00001 Trme-Chr16117 601 1336 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme16117g00001 2 139 Structural Maintenance of Chromosomes family AT5G07660 61.268 2.36e-54 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme16117g00001 K22804 - gmx:100816916 219.935