Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme16107g00001 ATGAATTGTGTAAAGTTCTTTGTGACTCATTACTCAGTCAGCAAGGAACATTTTAGATACTGCTCATCCAGCTCATCCAAATTGTTTATGGTTGCCTTGTTATCAGCTCCAGGTTGCAGTGCTTCAACACTAACATCCGGTGGATGTGGGAGTGCAACCAAAATCGGCGTTGTTGTCGCAGTGGTCGTAACCGGAGTTGTGATCGTGGCTGCTCTCATTATTCTATGCTTCTGTGCCAGGCGACGTTTTACTTGGTTGAGAAAACATACCAGAGTAAAACGCCTACTACGTGAAGCTGCAGGAAACTCTATTGTGCCTCTCTACTCTTACAAAGACATAGAAAAGGCCACAAATTCTTTCTCTGATAAGCAGAGGCTGGGAACTGGGGCCTTTGGTACAGTCTATTCTGGAAAACTTCGCAATGATGAGTTTGTTGCAATAAAGAAGATAAGGCATAGAGATACAAACAGTGTTGATCAAGTCATGAATGAGATCAAGCTCCTTTCTTCGGTGAGTCACCCAAATTTGGTTCGCCTCCTAGGTTGCTGCATCGAAGAGGGAGAGCAGATACTTGTTTATGAATATATGCCAAATGGAACGTTGTCTGAGCATTTGCAAAGAGAGAGAGGTAAAGGTCTACCGTGGACAATACGACTCACCATTGCCTCCGAAACCGCTAATGCTATAGCTTATCTCCATTCTTCAATTCATCCCCCAATTTACCACAGAGATATAAAATCCAGTAATATACTATTGGATTATAACTACAAATCGAAAGTAGCTGATTTTGGACTTTCTAGGCTTGGCATGATAGAGACATCACATATTTCAACTGCTCCGCAGGGTACTCCAGGCTATGTCGATCCTCAATACCACCAGAACTTCCATCTTTCTGATAAAAGTGATGTATACAGCTTTGGAGTGGTTTTGGTAGAGATAATAACTGCCATGAAAGTGGTTGATTTTGCCAGACCTCAAAGTGAGGTTAATTTAGCTGCACTTGCTGTTGATAGGATTAGGAGGGGTTCTATAGATGAGATTGTAGATCCCTTCCTTGAACCAAATAGAGATGCTTGGACTCTATATTCCATTAATAAGGTGGCTGAGCTTGCATTTAGATGTCTTGCTTTTCATAGTGAC 1140 0.4193 MNCVKFFVTHYSVSKEHFRYCSSSSSKLFMVALLSAPGCSASTLTSGGCGSATKIGVVVAVVVTGVVIVAALIILCFCARRRFTWLRKHTRVKRLLREAAGNSIVPLYSYKDIEKATNSFSDKQRLGTGAFGTVYSGKLRNDEFVAIKKIRHRDTNSVDQVMNEIKLLSSVSHPNLVRLLGCCIEEGEQILVYEYMPNGTLSEHLQRERGKGLPWTIRLTIASETANAIAYLHSSIHPPIYHRDIKSSNILLDYNYKSKVADFGLSRLGMIETSHISTAPQGTPGYVDPQYHQNFHLSDKSDVYSFGVVLVEIITAMKVVDFARPQSEVNLAALAVDRIRRGSIDEIVDPFLEPNRDAWTLYSINKVAELAFRCLAFHSD 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme16107g00001 380 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 36 377 IPR044652 GO:0004672
Trme16107g00001 380 SUPERFAMILY Protein kinase-like (PK-like) 101 377 IPR011009 -
Trme16107g00001 380 ProSiteProfiles Protein kinase domain profile. 120 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme16107g00001 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 240 252 IPR008271 GO:0004672|GO:0006468
Trme16107g00001 380 FunFam Wall-associated receptor kinase-like 20 196 380 - -
Trme16107g00001 380 SMART serkin_6 120 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme16107g00001 380 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Trme16107g00001 380 Gene3D Phosphorylase Kinase; domain 1 83 195 - -
Trme16107g00001 380 Gene3D Transferase(Phosphotransferase) domain 1 196 380 - -
Trme16107g00001 380 Pfam Protein kinase domain 121 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme16107g00001 380 FunFam Wall-associated receptor kinase-like 14 87 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme16107g00001 Trme-Chr16107 1 1440 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme16107g00001 37 380 Receptor kinase-like Gene Family AT2G23450 71.802 7.79e-177 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Trme16107g00001 Pkinase 7.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme16107g00001 - - vum:124829194 591.267