Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme161017g00001 ATGCTTTTGGAGATGGACCAGCCTGAAGTATTGCATCTTATTGAGTCACCCGATGCTCTCAAGGCTAAAGTTGCTGAAGCCATGGACGTGCTGCGAAATGTTGCTCAACAGCAAGGCAACAGCCCGGCAGATCAACTAGCTTCACTTTCTCTCAACGATAATCTATAA 168 0.4643 MLLEMDQPEVLHLIESPDALKAKVAEAMDVLRNVAQQQGNSPADQLASLSLNDNL 55
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme161017g00001 55 Gene3D - 1 45 - -
Trme161017g00001 55 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 1 36 IPR002004 GO:0003723
Trme161017g00001 55 MobiDBLite consensus disorder prediction 36 55 - -
Trme161017g00001 55 SUPERFAMILY PABC (PABP) domain 1 50 IPR036053 GO:0003723
Trme161017g00001 55 SMART poly_2 1 34 IPR002004 GO:0003723
Trme161017g00001 55 Pfam Poly-adenylate binding protein, unique domain 1 31 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme161017g00001 Trme-Chr161017 276 443 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme161017g00001 1 55 Eukaryotic Initiation Factors Gene Family AT1G49760 80.000 4.50e-23 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme161017g00001 K13126 - gmx:100778879 98.9821