Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme160981g00001 GCTAGTTTCAAAGAGGCATTACCAGGTCATATTAATGCACCTGCTGTATTCAGATGCCATAGAGTAACTGCTATTGGCAATGGTGAAGATGAATTTGCTTACTTGGCAACAGTTCATATTTGTGGCCATGTTTTCAAAGGGTTTCTCTATGATCATGGTGTTGATGGAAAAAATCCAATGCCTTGTGTTTCAGAACTTCAATTAGGAAGTGGAAANAATGGTGAATGTTCTTCTGCAATTGGTGTTACAACAAATAATGCTTACCCTGCTTCTGCTAGCTAG 282 0.3865 ASFKEALPGHINAPAVFRCHRVTAIGNGEDEFAYLATVHICGHVFKGFLYDHGVDGKNPMPCVSELQLGSGXNGECSSAIGVTTNNAYPASAS 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme160981g00001 93 Pfam Domain of unknown function (DUF702) 5 55 - -
Trme160981g00001 93 NCBIfam LRP1 C-terminal domain 6 54 IPR006511 -
Trme160981g00001 93 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 83 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme160981g00001 Trme-Chr160981 132 413 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme160981g00001 4 73 C2H2 Transcription Factor Family AT5G12330 55.714 1.59e-22 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Trme160981g00001 DUF702 4.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme160981g00001 - - gmx:100806835 154.066