Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme160804g00001 TGTGATTACTGTGGCCATTCAACCGCAGTTCTATACTGCAGAGCAGATTCAGCAAAACTCTGTTTCTCTTGTGACCGTGAAGTTCACTCCACAAACCAGCTTTTCTCCAAACACACACGCTCCTTAATCTGTGATTCATGCGATGATTCCCCTGCTACAATCCTCTGTTCAACAGAATCCTCTGTTTTCTGTCAAAACTGTGACTGGGAAAATCACAATCTTTCACTCTCTTCTCCACATGAACGAAGACCTCTTGAGGGTTTTACAGGGTGCCCTTCTGTAACTGAGCTTTTATCGATTCTGGGGTTGCAGGATATTGGGAAAAAATCGTTGCTTTTGCCTCNNNNNNNNNNANNNNATGGTTATGTTGGGTATGAGATTGAAGGGCTTTCTGATTTGTTTGTTTGGGATGCTCCTTCTTTTGTTAGTCTTGATGATCTTATTTCTACTTCTCCTTCTTCTCATAATTATCGTGCTATGGAGGTTCCTCCTTTGCCCAAGGTATAA 507 0.4103 CDYCGHSTAVLYCRADSAKLCFSCDREVHSTNQLFSKHTRSLICDSCDDSPATILCSTESSVFCQNCDWENHNLSLSSPHERRPLEGFTGCPSVTELLSILGLQDIGKKSLLLPXXXXXXGYVGYEIEGLSDLFVWDAPSFVSLDDLISTSPSSHNYRAMEVPPLPKV 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme160804g00001 168 ProSiteProfiles Zinc finger B-box type profile. 1 43 IPR000315 GO:0008270
Trme160804g00001 168 SMART bboxneu5 44 85 IPR000315 GO:0008270
Trme160804g00001 168 SMART bboxneu5 1 43 IPR000315 GO:0008270
Trme160804g00001 168 Pfam B-box zinc finger 42 85 IPR000315 GO:0008270
Trme160804g00001 168 Pfam B-box zinc finger 1 41 IPR000315 GO:0008270
Trme160804g00001 168 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 105 - -
Trme160804g00001 168 CDD Bbox1_BBX-like 1 43 - -
Trme160804g00001 168 ProSiteProfiles Zinc finger B-box type profile. 39 85 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme160804g00001 Trme-Chr160804 1 507 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme160804g00001 1 167 C2C2-CO-like Transcription Factor Family AT2G47890 54.167 6.73e-58 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Trme160804g00001 zf-B_box 8.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme160804g00001 - - cam:101499146 280.026