Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme160747g00001 ATGAAGGTGACTGAAAAGTGTGATGTGTATAGTTTTGGTGTCGTGGTGTTAGAGATATTGATGGGAAAACACCCTGGAGAATTCTTAGGTACCTTGTATTCAAACAAGTCTTNGACATTAATGGAAGTGCTTGTGAAGGATGTTGTAGACCAAAGGCTTCCACCTCCAACAGACAAATTAGGTGAAACAATAGTGTTCACAATGAGAGTAGCTTTGGCTTGTACGCGAGCTGCTCCTGAGTCTAGACCCACGATGCGATCTGTTGCACAAGAACTATCGGCTACTACACAGGATTGTCTTTCTCTGCCATTTG 313 0.4281 MKVTEKCDVYSFGVVVLEILMGKHPGEFLGTLYSNKSXTLMEVLVKDVVDQRLPPPTDKLGETIVFTMRVALACTRAAPESRPTMRSVAQELSATTQDCLSLPF 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme160747g00001 104 ProSiteProfiles Protein kinase domain profile. 1 104 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme160747g00001 104 SUPERFAMILY Protein kinase-like (PK-like) 2 97 IPR011009 -
Trme160747g00001 104 Gene3D Transferase(Phosphotransferase) domain 1 1 101 - -
Trme160747g00001 104 PANTHER LEUCINE RICH REPEAT KINASE 2 1 96 - -
Trme160747g00001 104 Pfam Protein tyrosine and serine/threonine kinase 2 92 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme160747g00001 Trme-Chr160747 30 342 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme160747g00001 1 100 Receptor kinase-like Gene Family AT1G25320 32.143 6.74e-14 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme160747g00001 PK_Tyr_Ser-Thr 7.9e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme160747g00001 - - gmx:100809137 150.984