Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme16068g00001 GTGGCTGTGTCAACCAACAAGGAAGTGGATGGTCATATCCCAAACTATCCAAGCTTACCTCCTCAGCTTGTGTGTCAACTTCATAATTTGACTATGCACGCTGATGTGGAGACCGATGAAGTGTACGCGCAGATGACCTTGCAACCTCTGAATGCTCAAGAGCAAAAAGAGGCTTACCTTCCAGCAGAGTTGGGAACTCCGAGTAAACAGCCAACAAACTACGTCTGCAAGACTTTGACTGCTAGCGACACAAACACTCATGGGGGATTCTCTGTGCCTCGCCGCGCACCTGAGAAAGTGTTTCCTCCATTGGACTTCTCTCAACAGCCTCCTGCTCAAGAGTTAATAGCAAGGGATTTGCATGGTAACGAATGGAAATTCAGACATATCTTCCGAGGTGAGTTCAGGAACGGACTAGAAGTCTAA 426 0.4765 VAVSTNKEVDGHIPNYPSLPPQLVCQLHNLTMHADVETDEVYAQMTLQPLNAQEQKEAYLPAELGTPSKQPTNYVCKTLTASDTNTHGGFSVPRRAPEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGEFRNGLEV 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme16068g00001 141 Gene3D - 73 139 IPR015300 -
Trme16068g00001 141 SUPERFAMILY DNA-binding pseudobarrel domain 60 137 IPR015300 -
Trme16068g00001 141 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 134 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme16068g00001 Trme-Chr16068 243 960 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme16068g00001 1 134 B3 DNA Binding Superfamily AT1G30330 88.060 1.40e-81 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme16068g00001 - - gmx:100798719 267.7