Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme160677g00001 TATTTATGTGGTGAACAGATCATGGAGCTGTGTAAACTTAGGGAAGATACAAAGAGGAACATCCATGCTATTATTGACAAGTTTGCAGAGAGAGGTCTTCGTTCTCTTGCTGTTTCTAGACAGGAAGTTCCTGAGAAAACTAAAGAAAGCCCCGGTGCTCCTTGGCAGTTTGTTGGTTTGCTGTCACTTTTTGACCCACCTAGGCATGACAGTGCTGAAACTATTCGGAGAGCACTTCATCTTGGTGTCAATGTTAAAATGATTACTGGTAAACTACTCTAA 282 0.4149 YLCGEQIMELCKLREDTKRNIHAIIDKFAERGLRSLAVSRQEVPEKTKESPGAPWQFVGLLSLFDPPRHDSAETIRRALHLGVNVKMITGKLL 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme160677g00001 93 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 5 70 IPR023299 GO:0000166
Trme160677g00001 93 PRINTS P-type cation-transporting ATPase superfamily signature 81 91 - -
Trme160677g00001 93 PRINTS P-type cation-transporting ATPase superfamily signature 59 70 - -
Trme160677g00001 93 Gene3D - 65 90 IPR023214 -
Trme160677g00001 93 PANTHER CALCIUM-TRANSPORTING ATPASE 5 90 - -
Trme160677g00001 93 Gene3D - 5 64 IPR023299 GO:0000166
Trme160677g00001 93 FunFam Membrane H(+)-ATPase1 4 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme160677g00001 Trme-Chr160677 1 373 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme160677g00001 5 93 Primary Pumps ATPases AT2G24520 75.281 3.49e-43 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme160677g00001 K01535 - psat:127081312 162.54