Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trme160624g00001 | ATGGATATGGAGAGCACGCGTAGATCGTTGGATAGATCGAGAGAACCAGGTGCTAAGAAGCCTCGATTGATCGATGAGCTTCAACAAGGTTCGAATCCAACTGCACGACCGTTTTCTCAACGNNNNNNNNTNNNNNNNNNNGTTGCTTCGATGTTATCGTCTGGTAGGTTTCGAATGAACGATAGAGACTCGGATAGCAGTGATGGTGGTGGTGGTTATCACCCACAACCACCGCCGCATCAAGAGCTTGTGACTCAGTATAAGGCTGCTCTTGCTGAGCTTACTTTCAACTCGAAACCTATAATTACCAATTTGACTATAATTGCTGGAGAGAATCTTTCTGCTGCAAAATCAATTGCTGGAGCTGTTTGTGCTAACATTCTAGAG | 387 | 0.4315 | MDMESTRRSLDRSREPGAKKPRLIDELQQGSNPTARPFSQRXXXXXXVASMLSSGRFRMNDRDSDSSDGGGGYHPQPPPHQELVTQYKAALAELTFNSKPIITNLTIIAGENLSAAKSIAGAVCANILE | 129 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trme160624g00001 | 129 | ProSiteProfiles | CID domain profile. | 79 | 129 | IPR006569 | - | |
| Trme160624g00001 | 129 | MobiDBLite | consensus disorder prediction | 1 | 82 | - | - | |
| Trme160624g00001 | 129 | PANTHER | PRE-MRNA CLEAVAGE COMPLEX II | 21 | 129 | IPR045154 | GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379 | |
| Trme160624g00001 | 129 | SUPERFAMILY | ENTH/VHS domain | 79 | 128 | IPR008942 | - | |
| Trme160624g00001 | 129 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Trme160624g00001 | 129 | Gene3D | - | 76 | 129 | IPR008942 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trme160624g00001 | 50 | 129 | C2H2 Transcription Factor Family | AT4G04885 | 47.500 | 4.49e-16 | 71.6 |