Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme1605g00001 ATGCAAGCCATCTTCAAAGAATCCAGGGGCTCCCCAGATTATCCAATGGCAGACTACGAAATCACACCCCCGCATGGAAGTGAGAAGCAAACACCTCCTAAAGACTTTGTCTGTCCAATAACCAGTAACATATTTGATGATCCAGTGACCCTTGAGACTGGTCAGACATATGAACGTAAAGCTATCGAGGAATGGTTCAATAGAGGGAACACAGCTTGTCCTATCACTCGTCAGAATCTGCAAAACACCAAGCTACCTAAGACAAATTATGTGCTCAAAAGACTAGTTGCTAGCTGGAAAGAACACAACCCCAGCTCAGTCCCGCCAACATGTGAGAGTCCATACAAAGATAACGAGGAAGAAGTAAAGACAACAATGCCTTCGGCTTCTCCTAATAGTGTCATAACGCAAGCCACCGTTGATGGGATGGTTAGTGAGTTACGCTGTGCAATCAATAACCTGTACATGTCAGAGATTCTCCAGGAATCTGAAATGGCGGTTCTTCAAATTGAGAAATTGTGGAGAGGAGGGAATCTGGGAGTGGATATCCATAGCATGCTATCAAAACCTCCAATAATTAACGGGTTTGTGGAGATACTTTTCAATTCTGTTGAACCCCATGTGCTACAGGCAGCAGTTTTCCTTCTGTCCGAGATGGGCTCTAGAGACAATGCTGTTATTCAGACTCTCACACGTGTAGACACTGACGTTGAATGTATAATGGCTCTTTTCAAGAAAGGGTTGACAGAGGCTGTTGTGCTATTGTATCTCCTAAACCCTTCCCCTGTGACTCTTACTGAGATGGCCATAGTGGAGTCCCTCATAGAAGTTTTTAGTCAGAAAGAGGAAGACTTGGTTAAGATGTGTTTAAATCCCMCAACAGCTGCAGTTCTTCTACTGGCACAGATTATTGGAAGCAGTGATGAGATAATTGYGTCTTCAGTTGTCAAGATTTTGTTYTCTGAAAAAGCCATTGGAGCTATTGCTGGAAGTTTGGGAGCTGAATGGGCAGAGGAAAGGATCGCTGCAGTGGAGATCTTATTGAGATGCATGCAAGAGGATGGGACTTGCAGGAACACCATTGCTGATAAAGCAGAGCTGTCTCCTATTCTGGAAACCTTCATCTGTGCAACTGATGTAGAGCGTTTCAAGATTGTTGAATTTTTTTCTGAATTGATCAAACAAAATAGGAGAACATTCAATGAACGAATCCTCCACATTATAAAGGAAGAAGGACCTTTTAGTACAATGCATACTCTTCTTATTCATTTGCAGACAGCCCTTCAAGATCAATGCCCAGTCATGGCCGGTCTTTTACTCCAACTTGATCTTCTGGTGGAACCAAGAAATATGAGCATATACCGTGAAGAGGCGATAGATACTCTTATTTCATGCCTGAAGAACTCAGATTTCCCTACTACCCAGTTAGCAGCTGCTAATACAATCATGTCACTGCAAGGGAGGTTCAGCTTCTCTGGAAAGCCTCTTATCAGAGAAGTCCTTCTTAAACGTGCAGGTATTGACAAAGGTCCCAGAAGTGATGTACAGGTGGATCATATGAGCAACTTCTTCTCAGAAATCGAAATAACTCCAGAAGAAGAGAAGGCGGCAGATGATTGGGAAAGAAAAATTGCATCTGTTCTAGTTAGCCACGAGTTTGGTATAATTTTTGAAGCTTTGGCAGATGGCATGAAGAGCAGAATTCCAGAACTACGTTCAGCGTGCTTTATATCAGCTACATGGCTCATATACATGCTGACCATTCTACCAGATACAGGCATACAAGGAGCAGCCCGTGTCTGTTTGCTAAAGCAGTTTGTAAATAAATTAAGTTCTGCTAAGGGCGTAGAACACAAAATCCTTTCTATGCTTGCTCTCAATAGCTTTCTTCATTTCTCTGGTAAGTTTCACTAA 1914 0.4258 MQAIFKESRGSPDYPMADYEITPPHGSEKQTPPKDFVCPITSNIFDDPVTLETGQTYERKAIEEWFNRGNTACPITRQNLQNTKLPKTNYVLKRLVASWKEHNPSSVPPTCESPYKDNEEEVKTTMPSASPNSVITQATVDGMVSELRCAINNLYMSEILQESEMAVLQIEKLWRGGNLGVDIHSMLSKPPIINGFVEILFNSVEPHVLQAAVFLLSEMGSRDNAVIQTLTRVDTDVECIMALFKKGLTEAVVLLYLLNPSPVTLTEMAIVESLIEVFSQKEEDLVKMCLNPXTAAVLLLAQIIGSSDEIIXSSVVKILFSEKAIGAIAGSLGAEWAEERIAAVEILLRCMQEDGTCRNTIADKAELSPILETFICATDVERFKIVEFFSELIKQNRRTFNERILHIIKEEGPFSTMHTLLIHLQTALQDQCPVMAGLLLQLDLLVEPRNMSIYREEAIDTLISCLKNSDFPTTQLAAANTIMSLQGRFSFSGKPLIREVLLKRAGIDKGPRSDVQVDHMSNFFSEIEITPEEEKAADDWERKIASVLVSHEFGIIFEALADGMKSRIPELRSACFISATWLIYMLTILPDTGIQGAARVCLLKQFVNKLSSAKGVEHKILSMLALNSFLHFSGKFH 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme1605g00001 637 SUPERFAMILY RING/U-box 20 106 - -
Trme1605g00001 637 MobiDBLite consensus disorder prediction 1 36 - -
Trme1605g00001 637 Pfam U-box domain 33 103 IPR003613 GO:0004842|GO:0016567
Trme1605g00001 637 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 108 IPR013083 -
Trme1605g00001 637 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 27 633 - -
Trme1605g00001 637 SUPERFAMILY ARM repeat 191 573 IPR016024 -
Trme1605g00001 637 CDD RING-Ubox_PUB 33 85 IPR045210 -
Trme1605g00001 637 SMART Ubox_2 35 99 IPR003613 GO:0004842|GO:0016567
Trme1605g00001 637 ProSiteProfiles U-box domain profile. 31 106 IPR003613 GO:0004842|GO:0016567
Trme1605g00001 637 Gene3D - 176 488 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme1605g00001 Trme-Chr1605 91 2603 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme1605g00001 33 126 U-box Gene Family AT5G42340 41.489 6.36e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme1605g00001 - - gmx:100808867 1006.51