Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme16055g00001 ATGAATATTACTATCAGAGGAATGAAGATAAGAAAGAAACACAGCCCTCAGGCCTATATGCACCATGTTGAGTTGATTTCAAAACTTAGGCATTCACACTTGGTTAGTTCACTTGGACATTCTTTTGATTGCAACCAGGAAGATTCAAGTGTCAACACTATATTTCTCATATTTGAGTTTGTTCAAGACAAAAGTTTAAGAAGCCGCGTCTCCGTATCAAATGGAGAAAGGCTTTGTTGGACACAAAGAATAGCAGCCACTATCGGAGTTGTGAAAGGCGTTCAATTTTTGCATACAGGGATAGTGCCTGGACTGTACTCAAATAATCTCAAGATAACTGATATTCTTTTGGATAACAATCATAATGTGAAAATAAGCAGTTATAATCTTCCAATCTATGCTGAAAACAAAAGAATGGTCTATAATGGAACTTCTGTTGGAGTAAAAGGAAATCTCCAAGCAAG 464 0.3642 MNITIRGMKIRKKHSPQAYMHHVELISKLRHSHLVSSLGHSFDCNQEDSSVNTIFLIFEFVQDKSLRSRVSVSNGERLCWTQRIAATIGVVKGVQFLHTGIVPGLYSNNLKITDILLDNNHNVKISSYNLPIYAENKRMVYNGTSVGVKGNLQA 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme16055g00001 154 SUPERFAMILY Protein kinase-like (PK-like) 8 140 IPR011009 -
Trme16055g00001 154 ProSiteProfiles Protein kinase domain profile. 1 154 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme16055g00001 154 Pfam Protein tyrosine and serine/threonine kinase 7 141 IPR001245 GO:0004672|GO:0006468
Trme16055g00001 154 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 12 135 - -
Trme16055g00001 154 Gene3D Transferase(Phosphotransferase) domain 1 3 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme16055g00001 Trme-Chr16055 352 1003 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme16055g00001 3 150 Miscellaneous Gene Families AT3G03770 54.667 7.80e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-1 Trme16055g00001 PK_Tyr_Ser-Thr 4.2e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme16055g00001 - - lja:Lj0g3v0004239.1 254.988