Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme160543g00001 ATGCCCAATTTACACAATGGCCAAAACATCCGGAAGTTGGTTAAGGATGGTTTCATTATCAGGAAGCCAACTAAGATTCACTCCCGCTCTCGTGCTAGGCGTATGAAGGAGGCCAAGAGGAAGGGACGTCATTCTGGATATG 142 0.4718 MPNLHNGQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGY 47
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme160543g00001 47 MobiDBLite consensus disorder prediction 24 47 - -
Trme160543g00001 47 PANTHER 60S RIBOSOMAL PROTEIN L19 6 47 IPR039547 GO:0003723|GO:0003735|GO:0022625
Trme160543g00001 47 MobiDBLite consensus disorder prediction 23 47 - -
Trme160543g00001 47 Pfam Ribosomal protein L19e 8 46 IPR000196 GO:0003735|GO:0005840|GO:0006412
Trme160543g00001 47 SUPERFAMILY Ribosomal protein L19 (L19e) 6 47 IPR035970 GO:0003735|GO:0005840|GO:0006412
Trme160543g00001 47 Gene3D - 3 25 IPR015972 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme160543g00001 Trme-Chr160543 11 337 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme160543g00001 8 47 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 92.500 5.66e-20 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme160543g00001 K02885 - sspl:121790280 83.5741