Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme160538g00001 ATGCTGCTGTTGTTAGAAGAACCTTTAAAAGCAGCTGGCTTTAAAACATTGCGTCTTGATGGGACACAGAATGCAAGACAAAGAGCTCAAGTTATTGAACAATTTCAACTCTCAAAAGTTGATGAGCCAATGATTCTGCTTGCAAGTCTCAAGTCTTCAAGTACAGGTATAAATCTTACGGCCGCCTCTAGAGTGTACTTAATGGAGCCATGGTGGAATCCAGCAGTTGAAGAACAAGCAATGGATCGTGTTCACCGCATTGGACAGAAAGAAGAAGTGAAGATTGTTAGACTGATAGCTAAAAATAGCATTGAAGAGAAAATATTACAGTTGCAAGAGAGGAAGAAAGAGATAACAAGCCGAGGATCTGGGAGGAGATCAAATGATATTGCTGGTATGGGCATAAATGATCTCCGTTTTGTTTTAGGAGAGTAG 435 0.4023 MLLLLEEPLKAAGFKTLRLDGTQNARQRAQVIEQFQLSKVDEPMILLASLKSSSTGINLTAASRVYLMEPWWNPAVEEQAMDRVHRIGQKEEVKIVRLIAKNSIEEKILQLQERKKEITSRGSGRRSNDIAGMGINDLRFVLGE 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme160538g00001 144 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 143 IPR027417 -
Trme160538g00001 144 Coils Coil 101 121 - -
Trme160538g00001 144 SMART helicmild6 3 88 IPR001650 -
Trme160538g00001 144 Pfam Helicase conserved C-terminal domain 10 88 IPR001650 -
Trme160538g00001 144 CDD SF2_C_SNF 1 99 - -
Trme160538g00001 144 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 1 141 - -
Trme160538g00001 144 Gene3D - 1 133 IPR027417 -
Trme160538g00001 144 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1 139 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme160538g00001 Trme-Chr160538 45 479 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme160538g00001 1 126 RAD5 or RAD16-like Gene Family AT5G05130 65.079 4.55e-53 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme160538g00001 K15711 - mnt:21388126 199.904