Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme160521g00001 GTATGGAGCTACGGTGTTTTCCTTTATGAACTCATTACTGGCAGGCGCCCTTTAGATCGAAATCTCCCCAAGGGTGAACAGAAGCTGTTGGAATGGATAAAGCCATACCTATCAGATTCAAAGAAATTTCAACTTATATTGGATCCAAGACTTGATAAGAAACAAGTAATCAAATCAGCCCAAAGACTTGCTACGATAGCTAACCGATGCTTAGTTAAAAATCCAAAGAGTCGACCAAAGATGAGCGAGGTTTTGCAAATGGTGAATGGAATAGTAGAATCATCATCCAGTGATAATTCACATATACCCTCGAAGAATGTGTCGAAAGTAGAAGTTTCACACGACGCTGAAATAAACATGAAGAAGAAACGGACTATGGATCAGAAGCCTGGAGAAAGTAATTGGTTTGTTAGGATGTGGAGACCAAAGCTTGTAAGAACATGTTAA 447 0.3937 VWSYGVFLYELITGRRPLDRNLPKGEQKLLEWIKPYLSDSKKFQLILDPRLDKKQVIKSAQRLATIANRCLVKNPKSRPKMSEVLQMVNGIVESSSSDNSHIPSKNVSKVEVSHDAEINMKKKRTMDQKPGESNWFVRMWRPKLVRTC 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme160521g00001 148 PANTHER OS01G0588500 PROTEIN-RELATED 1 90 - -
Trme160521g00001 148 SUPERFAMILY Protein kinase-like (PK-like) 1 96 IPR011009 -
Trme160521g00001 148 Gene3D Transferase(Phosphotransferase) domain 1 1 118 - -
Trme160521g00001 148 ProSiteProfiles Protein kinase domain profile. 1 92 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme160521g00001 148 Pfam Protein tyrosine and serine/threonine kinase 1 86 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme160521g00001 Trme-Chr160521 1 447 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme160521g00001 1 127 Receptor kinase-like Gene Family AT2G28250 36.957 3.52e-20 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trme160521g00001 PK_Tyr_Ser-Thr 2.7e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme160521g00001 - - gsj:114400704 249.98