Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme16049g00001 AATTTTTTGTACACTTCAAAGGATGAAAGTTCCGAGTTAAAAGCTATAGACTTTGGGTTATCAGATTTTGTCAGACCAGATGAAAGGCTTAATGACATTGTTGGAAGTGCATATTATGTGGCTCCTGAAGTTCTTCATAGATCTTACAGCACAGAGGCTGATGTATGGAGTATAGGTGTGATAGCATATATTCTATTATGTGGTAGTCGTCCATTTTGGGCTCGAACAGAGTCGGGTATTTTTAGGGCAGTTTTGAAAGCTGATCCAGGCTTTGACGAAGCTCCATGGCCATCCTTATCTTCAGAAGCAAAAGATTTTGTCCAACGCCTACTGAATAAGGACCCTCGGAAGCGAATATCCGCTGCTCAGGCTCTGAGTCATCCTTGGATACGTAATTACAACGATGTAAAAGTTCCACTTGATATCTTAATATTTAAACTCATGAAGACTTATATGAGATCATCATCATTGCGTAAGGCTGCCTTAAGGGCCTTATCAAAGACATTAACTGCTGACGAACTCTATTATCTGAGGGAACAATTTGCACTGTTGGAACCAAGCAAAAATGGGAGCATATCCTTGGAGAACATTAACAAGGCCTTGAAGAAATATGCAACAGATGCCATGAAAGAGTCTCGTATCACCGATTTTCTTTCCTCGCTGAGTTCATTACAATATAGAAGGATGGACTTTGAAGAATTTTGTGCTGCTGCATTAAGTGTGCACCAACTCGAAGCTCTTGATCGTTGGGAACAACATGCCCGTTGCGCATATGAACTTTTTGAGAAAGATGGAAACAGGGCTATTGTCATTGAAGAACTTGCTTCA 828 0.4046 NFLYTSKDESSELKAIDFGLSDFVRPDERLNDIVGSAYYVAPEVLHRSYSTEADVWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPGFDEAPWPSLSSEAKDFVQRLLNKDPRKRISAAQALSHPWIRNYNDVKVPLDILIFKLMKTYMRSSSLRKAALRALSKTLTADELYYLREQFALLEPSKNGSISLENINKALKKYATDAMKESRITDFLSSLSSLQYRRMDFEEFCAAALSVHQLEALDRWEQHARCAYELFEKDGNRAIVIEELAS 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme16049g00001 276 Pfam Protein kinase domain 1 130 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme16049g00001 276 PANTHER SERINE/THREONINE-PROTEIN KINASE 1 275 - -
Trme16049g00001 276 SMART serkin_6 1 130 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme16049g00001 276 SUPERFAMILY EF-hand 161 275 IPR011992 -
Trme16049g00001 276 Gene3D - 170 239 - -
Trme16049g00001 276 FunFam CDPK-related kinase 1 166 239 - -
Trme16049g00001 276 SUPERFAMILY Protein kinase-like (PK-like) 1 156 IPR011009 -
Trme16049g00001 276 Gene3D - 148 275 - -
Trme16049g00001 276 FunFam - 1 147 - -
Trme16049g00001 276 ProSiteProfiles Protein kinase domain profile. 1 130 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme16049g00001 276 Gene3D Transferase(Phosphotransferase) domain 1 1 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme16049g00001 Trme-Chr16049 100 1374 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme16049g00001 1 276 EF-hand Containing Proteins AT3G50530 75.896 4.72e-170 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Trme16049g00001 Pkinase 3.8e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme16049g00001 K13412 - gmx:100798913 525.013