Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme160278g00001 ATGAATTACGGCGGCGAAACGTTGGACTTCCGAAACCTTAAGGTAATATCCGCCGTTGGACGCGGTGCAAAGGGTGTCGTGTTCCTTGCAAGAACCTATGGATCATCGAAAGATGAATGGTGGGCTTTGAAACTTATATCAAAAGAACTTCTTCAGAAGAAAAACAATAACAAAACTGGTGAATGCAGAAGGGTTAGATTCGAACAACAAATACTACGTCGTTTTGATCATCCTCTTTTGCCACGGTTAAAATGTGTTGTTGAAACTGAGCAGCTTATTGGATTCGCCATTGATTATTGTCATGGTGGGAATTTGCATTCTCTTATGAAGAAACAACCGGAGAAAAAATTCTCTGAAGAAGCCATTAGGTATTACACTTTTTTCCTCTCTCACTCACAAAATTGTTTAGCTTTCATGTGA 420 0.3952 MNYGGETLDFRNLKVISAVGRGAKGVVFLARTYGSSKDEWWALKLISKELLQKKNNNKTGECRRVRFEQQILRRFDHPLLPRLKCVVETEQLIGFAIDYCHGGNLHSLMKKQPEKKFSEEAIRYYTFFLSHSQNCLAFM 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme160278g00001 139 Pfam Protein kinase domain 15 126 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme160278g00001 139 Gene3D Phosphorylase Kinase; domain 1 8 137 - -
Trme160278g00001 139 SUPERFAMILY Protein kinase-like (PK-like) 9 126 IPR011009 -
Trme160278g00001 139 PANTHER FLIPPASE KINASE 1-RELATED 8 126 - -
Trme160278g00001 139 ProSiteProfiles Protein kinase domain profile. 13 139 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme160278g00001 Trme-Chr160278 68 487 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme160278g00001 7 126 AGC Kinase Gene Family AT4G13000 50.000 2.83e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trme160278g00001 Pkinase 2.7e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme160278g00001 K20714 - gmx:100813693 178.333