Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme160140g00001 ATGGAACGGCGGCAACAATCGCCACCGTCTCCACCACCAACACCGCCGTCACGAATCATCCTTGGTAAATACGAACTAACGAAGTTTCTCGGTCGCGGAAACTTCGCCAAAGTATACCAAGCACGTTCACTCATCGACGGTTCAACCGTCGCCGTAAAAGTGATCGACAAATCCAAAACAGTTGATGCATCAATGGAGCCACGAATCGTTCGAGAAATCGACGCTATGCGCCGGCTTCAAAATCATCAAAATATCCTCAAGATCCATGAAGTTTTAGCCACGAAAACTAAGATCTATCTCATCGTTGATTTCGCCGGCGGCGGTGAACTTTTCTACAAACTTTCCCGACGAGGTAGGTTCCCGGAGTCATTAGCTCGTCGCTACTTTCAACAACTTGTTTCCGCTCTCTGTTTCTGCCACAAAAACGG 428 0.4813 MERRQQSPPSPPPTPPSRIILGKYELTKFLGRGNFAKVYQARSLIDGSTVAVKVIDKSKTVDASMEPRIVREIDAMRRLQNHQNILKIHEVLATKTKIYLIVDFAGGGELFYKLSRRGRFPESLARRYFQQLVSALCFCHKNG 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme160140g00001 143 SUPERFAMILY Protein kinase-like (PK-like) 20 143 IPR011009 -
Trme160140g00001 143 ProSiteProfiles Protein kinase domain profile. 24 143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme160140g00001 143 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 19 143 - -
Trme160140g00001 143 Gene3D Transferase(Phosphotransferase) domain 1 17 143 - -
Trme160140g00001 143 SMART serkin_6 24 143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme160140g00001 143 Pfam Protein kinase domain 24 143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme160140g00001 143 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524
Trme160140g00001 143 FunFam Non-specific serine/threonine protein kinase 17 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme160140g00001 Trme-Chr160140 95 522 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme160140g00001 10 143 CBL-interacting serine-threonine protein kinases AT4G14580 64.493 4.87e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Trme160140g00001 Pkinase 2.6e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme160140g00001 K12761 - gmx:100305372 217.238