Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme160067g00001 ATGTTTAGGCCTCAAGTTCAACCTATAAGTACTACAAAACTCTATAGAGGAGTTAGACAAAGACATTGGGGAAAATGGGTTGCTGAAATTCGTCTACCTCGAAATAGAACTCGTCTTTGGTTAGGCACATTTGATACCGCCGAAGATGCTGCTTTAGCCTATGATCGCGAGGCGTTCAAGTTAAGAGGTGAAAATGCAAGGCTCAATTTTCCTGAACTTTTTCTCAACAAAGATAAAGAAAAAGAAAAAGAAAAATCAGCACCTTCATCACCATCTCCAACAACAACAGCAGCAGATTCATCTGTTACTTCTNCGACAAGTAACACCGTGACAAAGCAGCCTGAGCCTCCACCGATGCAGACACTTCCAATAGAAGAGTCTAATGAGAATGACTCCGGAATTGGATCGAGTGACGCAACGGTGAGTGAAGGTGGAGAAGGAGTTTCACAGTCACAAGAATTGGTTTGGAGTGAAATGTCAGCATGGTTTAATGCTATTCCGGC 503 0.4254 MFRPQVQPISTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAALAYDREAFKLRGENARLNFPELFLNKDKEKEKEKSAPSSPSPTTTAADSSVTSXTSNTVTKQPEPPPMQTLPIEESNENDSGIGSSDATVSEGGEGVSQSQELVWSEMSAWFNAIPA 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme160067g00001 168 CDD AP2 13 73 IPR001471 GO:0003700|GO:0006355
Trme160067g00001 168 FunFam Ethylene-responsive transcription factor 2 13 72 - -
Trme160067g00001 168 Pfam AP2 domain 15 63 IPR001471 GO:0003700|GO:0006355
Trme160067g00001 168 Gene3D AP2/ERF domain 14 72 IPR036955 GO:0003700|GO:0006355
Trme160067g00001 168 MobiDBLite consensus disorder prediction 73 87 - -
Trme160067g00001 168 ProSiteProfiles AP2/ERF domain profile. 14 71 IPR001471 GO:0003700|GO:0006355
Trme160067g00001 168 SMART rav1_2 14 77 IPR001471 GO:0003700|GO:0006355
Trme160067g00001 168 MobiDBLite consensus disorder prediction 71 156 - -
Trme160067g00001 168 MobiDBLite consensus disorder prediction 123 156 - -
Trme160067g00001 168 PRINTS Ethylene responsive element binding protein signature 15 26 IPR001471 GO:0003700|GO:0006355
Trme160067g00001 168 PRINTS Ethylene responsive element binding protein signature 37 53 IPR001471 GO:0003700|GO:0006355
Trme160067g00001 168 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 10 163 - -
Trme160067g00001 168 MobiDBLite consensus disorder prediction 88 115 - -
Trme160067g00001 168 SUPERFAMILY DNA-binding domain 14 72 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme160067g00001 Trme-Chr160067 1 503 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme160067g00001 3 167 AP2-EREBP Transcription Factor Family AT2G20880 52.727 1.47e-47 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trme160067g00001 AP2 6.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme160067g00001 - - vvo:131648120 251.136