Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme160029g00001 ATGATTTTGTACGAGGTTCTTAGGTTATACCCACCCTTAATTGGCCTACCTCGAGATGTTAAGAATGATGTGAAACTTGGAAATTTGACATTATCAGCCGGAGTAGAGGTTTTCTTATCAATTCTTCTGCTTCACCACGACTGCGAACTATGGGGTGATGATGCTAAAATGTTCAATCCTGAGCGATTTTCCAGAGGAATTTCAAAAGCATCAAATGGTAGAGTTTCATTTTTTCCATTTGGATGGGGTCCTAGAATTTGTTTAGGGCAAAAATTTTCTCTATTGGAAGCAAAGATGGCAATGGCAATGATTTTGCAACATTTCTCATTTGAACTTTCACCAACATATGCTCATGCTCCATCCACAACGATTACTCTTCGACCACAATATGGTGCTCATATTATTCTACGCAAAGTGGAAACATAA 426 0.3826 MILYEVLRLYPPLIGLPRDVKNDVKLGNLTLSAGVEVFLSILLLHHDCELWGDDAKMFNPERFSRGISKASNGRVSFFPFGWGPRICLGQKFSLLEAKMAMAMILQHFSFELSPTYAHAPSTTITLRPQYGAHIILRKVET 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme160029g00001 141 PANTHER CYTOCHROME P450 FAMILY MEMBER 1 132 - -
Trme160029g00001 141 PRINTS P450 superfamily signature 1 11 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme160029g00001 141 PRINTS P450 superfamily signature 78 87 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme160029g00001 141 PRINTS P450 superfamily signature 87 98 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme160029g00001 141 Pfam Cytochrome P450 1 121 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme160029g00001 141 SUPERFAMILY Cytochrome P450 1 137 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme160029g00001 141 PRINTS B-class P450 signature 18 45 IPR002397 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme160029g00001 141 PRINTS B-class P450 signature 87 98 IPR002397 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme160029g00001 141 PRINTS B-class P450 signature 78 87 IPR002397 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme160029g00001 141 PRINTS B-class P450 signature 1 12 IPR002397 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trme160029g00001 141 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 80 89 IPR017972 GO:0005506|GO:0016705
Trme160029g00001 141 Gene3D Cytochrome P450 1 140 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme160029g00001 Trme-Chr160029 73 498 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme160029g00001 1 139 Cytochrome P450 AT3G14680 64.748 1.24e-63 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme160029g00001 - K23809 gmx:100777623 236.884