Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme15967g00001 ATGCTCAGAGGAGTATTTAAGTGGCTTAGTTTTCCCCCCTTGATAGCTAGCTTATACGGGAGGGTTCTCCAAGTTCTTAGATACTTATCGATTGGTTTCAGAGCTGGTTGGTGGTGGCTTGGAAAGGGCTACCTATGGAGGGGCCAAAATCATTTTAATGTTAGACTAGTATCATTATTCACCACTGCTACTACTGCTTTCGATATCATGATAGCAAATGCCCAACAGCCGAAGCTTTTCGTTGGAATGATTCTCATTCTCATCTTTGCTGAGGCATTGGCGTTGTATGGTCTCATTGTTGGCATCATCCTTTCTTCCCGTGCTGGCCAATCCAGAGCTGAGTAA 345 0.4435 MLRGVFKWLSFPPLIASLYGRVLQVLRYLSIGFRAGWWWLGKGYLWRGQNHFNVRLVSLFTTATTAFDIMIANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme15967g00001 114 CDD ATP-synt_Vo_c_ATP6C_rpt2 71 105 - -
Trme15967g00001 114 Gene3D - 12 111 IPR035921 -
Trme15967g00001 114 Pfam ATP synthase subunit C 69 104 IPR002379 GO:0015078|GO:0033177|GO:1902600
Trme15967g00001 114 SUPERFAMILY F1F0 ATP synthase subunit C 64 105 IPR035921 -
Trme15967g00001 114 PRINTS Vacuolar ATP synthase 16kDa subunit signature 83 106 IPR000245 GO:0033179|GO:0046961|GO:1902600
Trme15967g00001 114 PRINTS Vacuolar ATP synthase 16kDa subunit signature 56 82 IPR000245 GO:0033179|GO:0046961|GO:1902600
Trme15967g00001 114 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 68 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme15967g00001 Trme-Chr15967 511 1346 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme15967g00001 18 114 Primary Pumps ATPases(2) AT4G38920 52.885 1.08e-24 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme15967g00001 K02155 - jre:108980162 79.3369