Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme159623g00001 AATGATGATTTTGGAGAAGGGGGGTTCCAATTGACAAGGCACGTTGTAGGCACCCATGGTTACATGCCACCTGAGTATGTTGAGAACGGTTTGATTAGTCCAAAGATGGATGTTTTTGCTTTTGGGGTTGTGATATTGGAGCTTCTTTCAGGAAAAGAAGCAATTGTTGGGGATACGAATGGTGAGGAGAAGCTGCTATCAGCTGCTGTGAGTGAAGTACTTGAAGGCGACAATGTGAGGGAGAAACTTCATGCTTTTATGGATCCCAGTTTGAGGGGTGATTACCCATTGGATATGGCATATTCCATGGCAGAGATTGCCAAATGCTGTGTTGCCCGTGRCCACAATTTGCGTCCAAACATTTCTGAAGTTTTGGTTATACTGTCTAAGATTCATTCTTCACTAGATTGA 411 0.4331 NDDFGEGGFQLTRHVVGTHGYMPPEYVENGLISPKMDVFAFGVVILELLSGKEAIVGDTNGEEKLLSAAVSEVLEGDNVREKLHAFMDPSLRGDYPLDMAYSMAEIAKCCVARXHNLRPNISEVLVILSKIHSSLD 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme159623g00001 136 SUPERFAMILY Protein kinase-like (PK-like) 10 130 IPR011009 -
Trme159623g00001 136 Gene3D Transferase(Phosphotransferase) domain 1 3 136 - -
Trme159623g00001 136 Pfam Protein kinase domain 12 125 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme159623g00001 136 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 8 134 - -
Trme159623g00001 136 ProSiteProfiles Protein kinase domain profile. 1 135 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme159623g00001 Trme-Chr159623 2 412 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme159623g00001 3 134 Receptor kinase-like Gene Family AT2G33580 55.147 3.40e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trme159623g00001 Pkinase 4.2e-11 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme159623g00001 - - tpra:123901277 255.373