Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme159618g00001 ATGTCCTTAGTGAAGAGTCTTCTAGCTGAAGTAGATCCTAGCAATGNCCAACTCACAATTTCTACCGGTTCGGATCAATTTCCTTCGTGGATTAATGACGACGACAAGAAGCTATTGAAGGAAAATGGAGTGGCTGCTGATGTTGTTGTGGCGGCCGATGGAAGTGGGGATTACAAGAAGGTGACGGATGCGATATCGGCAGCACCAGAATATAGCATGAAAAGATATGTTATATATGTAAAGAAAGGTGTTTATGTTGAAAATGTTGAGATTAATAAGAAGAAATGGAATATTATGATGATCGGTGATGGTATCGATGCTACTGTTATCTCCGGTGA 338 0.4053 MSLVKSLLAEVDPSNXQLTISTGSDQFPSWINDDDKKLLKENGVAADVVVAADGSGDYKKVTDAISAAPEYSMKRYVIYVKKGVYVENVEINKKKWNIMMIGDGIDATVISG 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme159618g00001 112 Gene3D - 8 112 IPR012334 -
Trme159618g00001 112 PANTHER PECTINESTERASE 17 112 - -
Trme159618g00001 112 Pfam Pectinesterase 47 112 IPR000070 GO:0030599|GO:0042545
Trme159618g00001 112 ProSitePatterns Pectinesterase signature 1. 72 91 IPR018040 -
Trme159618g00001 112 SUPERFAMILY Pectin lyase-like 44 112 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme159618g00001 Trme-Chr159618 1 338 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme159618g00001 22 112 Carbohydrate Esterase AT3G43270 65.217 1.58e-37 130