Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trme159604g00001 GAGAAAGCTTTGAGGATATCAGGTTCCGCGTCAGGAGCCGAGGATTTCTCTTATCCTTGGACTTTCATACCATTTCAGAAACTGAATTTCAGCATAGATAATATCTTGGATTGCTTGAAAGACGAAAATGTGATCGGAAAAGGTTGTTCTGGTGTTGTGTATAAGGCTGAGATGCCGCACGGAGAGGTTATAGCAGTGAAGAAGCTTTGGAAAACAAACAAAGGAGATGAAATGGTGGATTCTTTTGCTGCTGAGATTCAGATTCTTGGCTACATTCGACATAGAAATATTGTGAGGCTCATAGGTTATTGTTCTAATGGGAGTGTTAAGCTTCTTCTCTATAACTACATCCAAAATGGTAATCTAAGACAGCTTTTGGAAGGGAATAGGAACTTAGACTGGGAAACTAGATACAAGATTGCTGTTGGTTCAGCTCAGGGTCTAGCTTACCTTCATCATGATTGTGTCCCATCAATTCTTCACAGAGATGTTAAGTGCAATAACATACTTCTAGATTCCAA 521 0.3973 EKALRISGSASGAEDFSYPWTFIPFQKLNFSIDNILDCLKDENVIGKGCSGVVYKAEMPHGEVIAVKKLWKTNKGDEMVDSFAAEIQILGYIRHRNIVRLIGYCSNGSVKLLLYNYIQNGNLRQLLEGNRNLDWETRYKIAVGSAQGLAYLHHDCVPSILHRDVKCNNILLDS 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trme159604g00001 173 ProSiteProfiles Protein kinase domain profile. 39 173 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme159604g00001 173 ProSitePatterns Protein kinases ATP-binding region signature. 45 68 IPR017441 GO:0005524
Trme159604g00001 173 SMART serkin_6 39 173 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme159604g00001 173 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672|GO:0006468
Trme159604g00001 173 Gene3D Phosphorylase Kinase; domain 1 14 116 - -
Trme159604g00001 173 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 32 173 - -
Trme159604g00001 173 Gene3D Transferase(Phosphotransferase) domain 1 117 173 - -
Trme159604g00001 173 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 20 116 - -
Trme159604g00001 173 Pfam Protein kinase domain 41 172 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trme159604g00001 173 SUPERFAMILY Protein kinase-like (PK-like) 22 173 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trme159604g00001 Trme-Chr159604 1 521 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trme159604g00001 17 173 Receptor kinase-like Gene Family AT5G65700 54.717 4.92e-56 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trme159604g00001 Pkinase 2.7e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trme159604g00001 - - tpra:123903867 354.755